Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121832g00005 ATGACGCAGGGCATGATGAACAACTGCTGGTTCAAGGTGAAAACCAACGTGTGCAAGCCTCACAAGGGCGAAATCGGACTTGTCTTCGAACACCCAACGCAACCGGGGAACCAACCCGGTGGTTGGATGGCGAAGGAAAGGCACTTAGAGAAGTCAGCAGAGTCAACGCAAACACTCAAGAAGAGTGTCTCCTCACCCTTCATGAATACAGCTTCAAAGATGTTTTCCATGTCCGAAGTGAAGAAGCACAATACACCAGATTCAACGTGGATCATTGTCCACGGCCATGTCTACGACTGCACCAGGTTCCTCAAGGAACACCCTGGAGGCTCTGACAGCATCCTCATCAATGCCGGCTCCGATTGCACGGAGGAGTTTGATGCCATTCATTCCGATAAGGCTAAGAAGTTGCTTGAAGATTTCCGAATTGGCGAGCTTATTACCACAGAGACCACCATACCACCACTACCACCACCACCAATTACACCAAAACCGCCGGCACAAAGCGTAGCCCTCAACCCACGGGAAAAAATTCCATGCAAGCTTGTATCCAAAACCTCCATCTCCCATGACGTGAGGCTCTTCCGTTACGCTCTTCCACACGAAGATCAGAAACTAGGCCTCCCAGTAGGGAAGCACATCTTCGTCTGCGCTGCTATTGACGGTAAATTCTGCATGAGAGCCTACACGCCGACTAGCGGAGCAGACGAAGTGGGCCACTTCGATCTTCTCGTCAAGGTTTACTTCAAAGACGTGCATCCAAAGTTCCCCAACGGAGGATTAATGTCGCAGCATCTGGACTCGCTCTCGTCCATTGATGTTAAGGGCCCATTGGGCCACATAGAGTACACCGGAAGAGGTAATTTCTTGATCCATGGGAAACAAAGGTTTGCAACTAATCTTACCATGGTGGCCGGTGGAACTGGGATCACACCAATTTACCAGGTGGCTCAGGCGATTCTCAAGGACCCTGAGGACCGCACCAAGATGTACGTGGTGTATGCGAACCGAACGGAGGATGATATATTGCTGAGGGAAAAACTTGATTTGTGGGCTAAGGAGTACGGTGATAGGTTCAAGGTTTGGTATGTGGTGGAAAAAGCAAGGGAAGAGTGGGAGTACAGTGTGGGGGTACATAACAGAGAGCGTGCTGAGGGAGCATGTTCCAGAAGGGTCTCAAGGTACTTTGGCTTTGGCTTGTGGTCCACCACTTATGATTTAGTTTGCGGTGCAACCTAA 1239 0.502 MTQGMMNNCWFKVKTNVCKPHKGEIGLVFEHPTQPGNQPGGWMAKERHLEKSAESTQTLKKSVSSPFMNTASKMFSMSEVKKHNTPDSTWIIVHGHVYDCTRFLKEHPGGSDSILINAGSDCTEEFDAIHSDKAKKLLEDFRIGELITTETTIPPLPPPPITPKPPAQSVALNPREKIPCKLVSKTSISHDVRLFRYALPHEDQKLGLPVGKHIFVCAAIDGKFCMRAYTPTSGADEVGHFDLLVKVYFKDVHPKFPNGGLMSQHLDSLSSIDVKGPLGHIEYTGRGNFLIHGKQRFATNLTMVAGGTGITPIYQVAQAILKDPEDRTKMYVVYANRTEDDILLREKLDLWAKEYGDRFKVWYVVEKAREEWEYSVGVHNRERAEGACSRRVSRYFGFGLWSTTYDLVCGAT 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121832g00005 412 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 272 410 IPR039261 -
Stsc121832g00005 412 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 72 147 IPR001199 -
Stsc121832g00005 412 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 71 159 IPR036400 -
Stsc121832g00005 412 Pfam Oxidoreductase FAD-binding domain 180 283 IPR008333 -
Stsc121832g00005 412 Gene3D - 70 153 IPR036400 -
Stsc121832g00005 412 Gene3D Translation factors 167 278 - -
Stsc121832g00005 412 Gene3D - 279 412 IPR039261 -
Stsc121832g00005 412 FunFam Nitrate reductase 68 149 - -
Stsc121832g00005 412 CDD cyt_b5_reduct_like 180 410 - -
Stsc121832g00005 412 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 227 234 IPR001709 GO:0016491
Stsc121832g00005 412 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 106 116 IPR001709 GO:0016491
Stsc121832g00005 412 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 405 412 IPR001709 GO:0016491
Stsc121832g00005 412 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 340 351 IPR001709 GO:0016491
Stsc121832g00005 412 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 328 337 IPR001709 GO:0016491
Stsc121832g00005 412 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 259 268 IPR001709 GO:0016491
Stsc121832g00005 412 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 302 321 IPR001709 GO:0016491
Stsc121832g00005 412 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 103 110 IPR018506 GO:0020037
Stsc121832g00005 412 SMART Cyt_b5_2 75 147 IPR001199 -
Stsc121832g00005 412 PRINTS Cytochrome B5 signature 122 129 IPR001199 -
Stsc121832g00005 412 PRINTS Cytochrome B5 signature 134 146 IPR001199 -
Stsc121832g00005 412 PRINTS Cytochrome B5 signature 107 121 IPR001199 -
Stsc121832g00005 412 PRINTS Cytochrome B5 signature 97 107 IPR001199 -
Stsc121832g00005 412 Gene3D - 2 66 - -
Stsc121832g00005 412 SUPERFAMILY Riboflavin synthase domain-like 170 284 IPR017938 -
Stsc121832g00005 412 PANTHER NADH-CYTOCHROME B5 REDUCTASE 57 410 IPR001834 GO:0016491
Stsc121832g00005 412 PRINTS Cytochrome B5 reductase signature 227 234 - -
Stsc121832g00005 412 PRINTS Cytochrome B5 reductase signature 206 217 - -
Stsc121832g00005 412 PRINTS Cytochrome B5 reductase signature 302 321 - -
Stsc121832g00005 412 PRINTS Cytochrome B5 reductase signature 269 283 - -
Stsc121832g00005 412 PRINTS Cytochrome B5 reductase signature 340 351 - -
Stsc121832g00005 412 FunFam NADH-cytochrome b5 reductase 166 278 - -
Stsc121832g00005 412 Pfam Oxidoreductase NAD-binding domain 303 389 IPR001433 GO:0016491
Stsc121832g00005 412 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 175 292 IPR017927 GO:0016491
Stsc121832g00005 412 Pfam Cytochrome b5-like Heme/Steroid binding domain 77 146 IPR001199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121832g00005 Stsc-Chr121832 15352 17742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121832g00005 168 388 NADPH P450 reductases AT5G17770 38.496 5.65e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121832g00005 K10534 - gmx:100813471 623.624