Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121830g00002 ATGGAGGAACAAATCCTTGTAGACCAAAACTTCCCTCTCTTCAAACCGACCTCCAAACCCCCCCTAAACCCTAATTCTGCCGTCAACAACAATCACTCAACCTCCAAAACCGCCGCTGCCACCACCACCACCACTGATTCCCCCTCCTCCTCCGCCTCCACATTCGCCGAACTTGGACTTGCCGAATGGGCTGTGAAGACATGCCGCGAGCTCGGGATGAAGCGTCCCCGGCGCGTTCAGTCGCACTGCATCCCGCACGTGCTGGAGGGCCGACACGTGCTCGGCATCGATGAAACCGGAAGCGGCAAGACCGCCGCCTTCGCTCTCCCAATCCTCCACCGCCTGTCGGAGCACCCGTTCGGCGTGTTCTCATTGGTAGTGACGCCCACTCGGGAGCTAGCGTTCCAGCTGGCGGAGCAGTTCCGTGCCCTCGGGTCCTGCCTCCACCTCCGCATTGCTGTGGTTGTCGGCGGCATGGACATGCTCCGGCAGACCAAGGAGCTTGCTGCCAGGCCTCATGTTGTTATAGCCACGCCCGGGAGGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCAAGTTTTTGCCAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTTGATGTCGGTTTTCAGGAGGAATTGAAATTTATCTTTAGGTGCTTACCAGAAAATAGGCAAAATATGTTCTTTTCTGCAACAACCACAAGTAATCTGCAAAAGTTGTCTGAGCGTTACCGGGATAAACTGTATGTCTACGAGGCATATGAAGGCCTGAAAACTGTAGAAACACTTAAGCAACAGGCTATGTTCATCCCTAAGAAGGTGAAGGAGGTATATTTGATGCATATTTTATCAAAAATGGAAGATATGGGCATCCGGTCTGCCATGGTATTTATCGCTACATGCAGGACCATGTTGCCCCGTTTGGTAATATCTCAAACAAGTTTGCCTACCATAGTTTTTGATTGCGGATGGCGGCATATGGCGGTGAGCCAAAAATCTGCCATAAAATAA 1026 0.5175 MEEQILVDQNFPLFKPTSKPPLNPNSAVNNNHSTSKTAAATTTTTDSPSSSASTFAELGLAEWAVKTCRELGMKRPRRVQSHCIPHVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFSLVVTPTRELAFQLAEQFRALGSCLHLRIAVVVGGMDMLRQTKELAARPHVVIATPGRIKALLENPDIPQVFARTKFLVLDEADRVLDVGFQEELKFIFRCLPENRQNMFFSATTTSNLQKLSERYRDKLYVYEAYEGLKTVETLKQQAMFIPKKVKEVYLMHILSKMEDMGIRSAMVFIATCRTMLPRLVISQTSLPTIVFDCGWRHMAVSQKSAIK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121830g00002 341 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Stsc121830g00002 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 252 IPR027417 -
Stsc121830g00002 341 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 53 81 IPR014014 GO:0003724
Stsc121830g00002 341 Gene3D - 23 256 IPR027417 -
Stsc121830g00002 341 Pfam DEAD/DEAH box helicase 78 245 IPR011545 GO:0003676|GO:0005524
Stsc121830g00002 341 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 84 256 IPR014001 -
Stsc121830g00002 341 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 46 308 - -
Stsc121830g00002 341 CDD DEADc_DDX49 55 257 - -
Stsc121830g00002 341 SMART ultradead3 72 271 IPR014001 -
Stsc121830g00002 341 MobiDBLite consensus disorder prediction 1 51 - -
Stsc121830g00002 341 MobiDBLite consensus disorder prediction 20 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121830g00002 Stsc-Chr121830 6894 8784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121830g00002 54 307 Eukaryotic Initiation Factors Gene Family AT3G13920 29.921 1.45e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121830g00002 K14778 - gmx:100798597 464.922