Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121830g00001 ATGGCGAAACTGCTGTTGCAGCCACCATGGCGCCCGCCACGAAAAGACCATCGCGGCATGCTCAAAATGGCGTTTGGCTCAAAATCCACCATGCCATACCACCATGGCCAATATTTTAAAACACTGTTGCCTACCTATTTTTCTGATATTATAGTTATTTATGTCATCTATGGAAACCTAGATTGTCATCGTTTAAGTTCAATGCTAGAAGTGCTTGATCTTGAAGCAGCAGCTCTATATTCATTTAAATCACAGGCTCAAAGACTTGAGGCACTTCAGCAGTTTAAATCAGGGAAGGTTTCTATACTGCTAGCAACCGATGTTGCCAGCCGTGGTTTAGACATCCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGATTATGTTCATCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGAGGACTGGCTTTGAGCCTTGTTACCCAGGTGTTCAGTGCCAAAAATGTGGCAGAAATGAAGATGTTGGATGATGGATTTGAGGAGAAAGCAAAGGAGAGGAAAAAACAGAAACTGAAATTGCTAGCAGAGAATGGATTGTTAAATAAAAGTGGTAAAAAGAGAAAAAGAAACAAAGGATCTGCAGAAGGAAAGAAACAGAAAAAAGAGGTGGAAGCATCAGCAGATAAATCATCAATAAAAATGGTGAGTAAGAAGAGAAAAAATGAAGAAAGGAAGCTTGCAGAGCAAGAGACAAAGTTTGGAAGCAAAACAGAGGAAGAACTCCACGCATATGCGTGCTACTCAAGGACCTCTCCACGCCTAGACAGCTTTGGCCACGCCTAG 822 0.4221 MAKLLLQPPWRPPRKDHRGMLKMAFGSKSTMPYHHGQYFKTLLPTYFSDIIVIYVIYGNLDCHRLSSMLEVLDLEAAALYSFKSQAQRLEALQQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSLVTQVFSAKNVAEMKMLDDGFEEKAKERKKQKLKLLAENGLLNKSGKKRKRNKGSAEGKKQKKEVEASADKSSIKMVSKKRKNEERKLAEQETKFGSKTEEELHAYACYSRTSPRLDSFGHA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121830g00001 273 MobiDBLite consensus disorder prediction 187 247 - -
Stsc121830g00001 273 CDD SF2_C_DEAD 61 153 - -
Stsc121830g00001 273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 169 IPR027417 -
Stsc121830g00001 273 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 60 255 - -
Stsc121830g00001 273 Pfam Helicase conserved C-terminal domain 59 144 IPR001650 -
Stsc121830g00001 273 Gene3D - 52 268 IPR027417 -
Stsc121830g00001 273 SMART helicmild6 63 144 IPR001650 -
Stsc121830g00001 273 MobiDBLite consensus disorder prediction 208 247 - -
Stsc121830g00001 273 Coils Coil 225 245 - -
Stsc121830g00001 273 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 38 187 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121830g00001 Stsc-Chr121830 1224 6283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121830g00001 65 182 Eukaryotic Initiation Factors Gene Family AT5G11170 38.136 4.15e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121830g00001 K14778 - gmx:100804060 222.246