Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121820g00005 ATGGGAAGAGTTAAATTAAAGATAAAGAAATTGGAAAGCACCAACAATCGCCAAGTGACTTATTCCAAGAGGAAAAGCGGAATCTTGAAGAAAGCCAAGGAATTGTCCATACTCTGTGATATACATATCGTTCTTCTCATGTTTTCTCCAACAGGCAAGCCTACATTGCTACAAGGAGAGCGCAGCAATATCGAGGAAGTCATTGCGAAATTTGCTCAACTTACTCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGTCTTGAAGCACTAAAGAAAACCTTCAAGAAATTGGATCACGATGTAAAAATACAAGATTTCTTGGGTTCGAGCAGTCAAACTGTGGAGCTATTGGAATAA 357 0.3894 MGRVKLKIKKLESTNNRQVTYSKRKSGILKKAKELSILCDIHIVLLMFSPTGKPTLLQGERSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQTVELLE 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121820g00005 118 Coils Coil 77 97 - -
Stsc121820g00005 118 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc121820g00005 118 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc121820g00005 118 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc121820g00005 118 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Stsc121820g00005 118 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 90 - -
Stsc121820g00005 118 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Stsc121820g00005 118 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc121820g00005 118 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Stsc121820g00005 118 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Stsc121820g00005 118 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121820g00005 Stsc-Chr121820 16680 19647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121820g00005 1 117 Type I MADS-box Gene Family AT2G03060 74.359 1.57e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc121820g00005 SRF-TF 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121820g00005 - - aip:107633054 217.238