Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121820g00003 ATGAGCTGTGGAGCATGTTTTGAGGTGAAGTGTGTGAGTGACCAAAGGTGGTGCCTCCCTGGCTCAGTTGTGATAACTGCCACCAATTTCTGCCCTCCAAACAACGCCCTCCCAAACAATAATGGTGGTTGGTGCAACCCTCCCCTTCAACACTTTGATCTCTCTCAGCCTGTCTTCCTACAAATTGCTAAATACAGGGCTGGCATAGTCCCTGTAGCTTATAGAAGGGTCCCATGCCAAAGGAAAGGAGGCATCAGATTCACCATCAATGGTCATTCTTACTTCAACTTAGTCCTAATCACCAACGTTGGGGGTGCAGGTCAAGTTAGCGCGGTTTCCATCAAAGGCACAAGAACCTCTTGGCAACCAATGTCCAGGAACTGGGGTCAGAACTGGCAGAGCAATGCTTACCTCAACGGACAAAGCCTCTCCTTTAAGGTCACTGCTGGCGACGGCCGCACGCTTGTCTCCAATGATGTTGCCCCTCCTGGCTGGTCCTTTGGCCAAACCTTCACAGGCCAACAGTTCCCTTAG 534 0.5094 MSCGACFEVKCVSDQRWCLPGSVVITATNFCPPNNALPNNNGGWCNPPLQHFDLSQPVFLQIAKYRAGIVPVAYRRVPCQRKGGIRFTINGHSYFNLVLITNVGGAGQVSAVSIKGTRTSWQPMSRNWGQNWQSNAYLNGQSLSFKVTAGDGRTLVSNDVAPPGWSFGQTFTGQQFP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121820g00003 177 PRINTS Expansin signature 11 22 IPR002963 GO:0009664
Stsc121820g00003 177 PRINTS Expansin signature 42 59 IPR002963 GO:0009664
Stsc121820g00003 177 PRINTS Expansin signature 59 72 IPR002963 GO:0009664
Stsc121820g00003 177 PRINTS Expansin signature 130 151 IPR002963 GO:0009664
Stsc121820g00003 177 PRINTS Expansin signature 23 33 IPR002963 GO:0009664
Stsc121820g00003 177 PRINTS Expansin signature 159 175 IPR002963 GO:0009664
Stsc121820g00003 177 PRINTS Expansin signature 95 116 IPR002963 GO:0009664
Stsc121820g00003 177 PRINTS Expansin signature 83 95 IPR002963 GO:0009664
Stsc121820g00003 177 SUPERFAMILY Barwin-like endoglucanases 2 102 IPR036908 -
Stsc121820g00003 177 Gene3D - 83 176 IPR036749 -
Stsc121820g00003 177 PANTHER EXPANSIN-A15 1 176 IPR002963 GO:0009664
Stsc121820g00003 177 SMART dpbb_1 1 74 IPR007112 -
Stsc121820g00003 177 FunFam Expansin 84 176 - -
Stsc121820g00003 177 SUPERFAMILY PHL pollen allergen 81 173 IPR036749 -
Stsc121820g00003 177 Pfam Lytic transglycolase 2 74 IPR009009 -
Stsc121820g00003 177 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 94 173 IPR007117 -
Stsc121820g00003 177 Pfam Expansin C-terminal domain 85 162 IPR007117 -
Stsc121820g00003 177 PRINTS Expansin/Lol pI family signature 121 135 IPR007118 GO:0005576
Stsc121820g00003 177 PRINTS Expansin/Lol pI family signature 67 83 IPR007118 GO:0005576
Stsc121820g00003 177 PRINTS Expansin/Lol pI family signature 159 173 IPR007118 GO:0005576
Stsc121820g00003 177 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 84 IPR007112 -
Stsc121820g00003 177 Gene3D - 1 80 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121820g00003 Stsc-Chr121820 13812 14932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121820g00003 1 176 Expansin Gene Family AT2G03090 78.409 6.28e-108 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121820g00003 - K20628 mnt:21389918 330.102