Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121816g00001 ATGATGGCAGGTAGTGGACAACTAACGGTTCCACCAGGGTTTAGGTTCCACCCAACTGATGAGGAGCTTCTCTACTATTACCTAAGGAAGAAAGTGTCTTATGAAGCCATTGACCTTGATGTCATCAGAGAAGTTGATCTCAATAAACTTGAACCTTGGGACCTCAAAGATAAATGCAGGATAGGATCAGGGTCTCAGAACGAGTGGTATTTTTTCAGTCACAAAGATAAAAAGTACCCAACAGGAACAAGAACAAATAGAGCAACCACTGCTGGGTTTTGGAAAGCCACTGGGAGGGACAAGGCTATATACCATACTAGCAATTCCAAGAGGATTGGGATGAGGAAGACATTAGTTTTCTACACTGGACGCGCTCCGCATGGCCAAAAGACTGATTGGATCATGCATGAATATCGCCTTGATGAAGACGATGCCGAGGTTCAGGAGGATGGGTGGGTGGTGTGCAGGGTTTTCAAGAAGAAAAACCAAATGAGAGGCTTCCATCAAGAAATTGAAGAAGAAGAACATCATTTAGTAGCACATCAGCACATGAGAGGATTAACAACAACCCAACAAGTTCTGGACCCAAAACATCACCACCACATGCAAAACCATCAAGGTCTTTATGATAATAATAACAATTACGGTAACAACTTTGATGGCTCCATGCACCTTCCACAGTTGTTCAGCCCAGAGTCTTCTGTGGCTGCAGCTGCGGTGGGACATTCTACTTCCATGAATGCTATGGATATTCTTGAATGCTCTCAGAACCTTCTAAGGCTCACAACAACAAGTGGGTGTGGACTCAATCTCATGCAACAACAAGGAGGAGAGAGATTCAACGGTGATTGGTCTTTCCTTGATAAGCTTCTTGCTTCACACCATGGCGGCACCATGGATCATCATCATCATCACCACAGCAAATGTAATAATGATAATAATAGTAATAATCTACATCATCAGCATGGTGCAATTGCTATTGGCACTGCTCCATCTCAGAAATTCCCATTTCACTATCTTGGTTGTGACAACCATGATATCATGAAATTTTCCAAGTAA 1059 0.4287 MMAGSGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGSQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDAEVQEDGWVVCRVFKKKNQMRGFHQEIEEEEHHLVAHQHMRGLTTTQQVLDPKHHHHMQNHQGLYDNNNNYGNNFDGSMHLPQLFSPESSVAAAAVGHSTSMNAMDILECSQNLLRLTTTSGCGLNLMQQQGGERFNGDWSFLDKLLASHHGGTMDHHHHHHSKCNNDNNSNNLHHQHGAIAIGTAPSQKFPFHYLGCDNHDIMKFSK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121816g00001 352 MobiDBLite consensus disorder prediction 296 317 - -
Stsc121816g00001 352 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Stsc121816g00001 352 FunFam NAC domain-containing protein 19 164 - -
Stsc121816g00001 352 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Stsc121816g00001 352 Pfam No apical meristem (NAM) protein 11 140 IPR003441 GO:0003677|GO:0006355
Stsc121816g00001 352 Gene3D NAC domain 19 165 IPR036093 GO:0003677|GO:0006355
Stsc121816g00001 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121816g00001 Stsc-Chr121816 13882 16282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121816g00001 2 352 NAC Transcription Factor Family AT1G79580 56.545 2.88e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc121816g00001 NAM 7.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121816g00001 - - gmx:100789606 502.286