Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121814g00001 ATGGAGCTTGATTTGAATCAGGAGCCTTTGGAGTTGGAGCCTTCTCACAATTCAGTAGCTGAAATTGATTCTCTGTTGAATGAACTTGAGTCTGCACATGGACATATACATGACCGGATTAGACACCTCGAAGCAGTGTATACCAGTGCTCGGCTGCGTTACAGGTGGCCGCCGGTTCACACTCCGATTCAGATAACAAACTTTACGGGTGAAGAAGCTGTAACGGCAAATGATGAAGATGGAGGAGGAAGGGACAACCCGGTAGCTGAAGAATCTGAAGTTGCAAATGAAGCTAAAAGTAAGGGCACTCATTTGATTGCTAAGGCGTTGGGCATTGAACAGACGGATGCCAGTGTGGCTGACCAAAGCTCTGCGAGTTTCTTTGATTGTAATATCTGCCTAGACATTGCGAGAGATCCTGTATTGACGTGCTGCGGCCACTTGTTTTGTTGGCCGTGCTTCTATCAGGTGTCGTATGCTTATTCGAATGCAAAGGAATGCCCTGTTTGTAAAGGAGAGGTAACTGAAAAGGGCATTATCCCAATCTATGGCAATGGAAGTAGCAGCACTAGCAATTCGAAGTTGGAATCAAATGAAACCAGTTTGAAAGTTCCTCCTCGACCTCCAGCGCCAAGAGTGGAGAGCATACGGCAGCAGCTTATTAACCAAGGGGCTTCTTCTTCAACAATACGAAATCTTAGGCGGTTTCATAACCTAATTAGTGGGCGTGGAGAGCGAGTTCAGTCAGAAACCCCCAATATGCCTACAGGCAGCAGAAATAATGTTGTTCATGCTCAAACCCAACGGGAGATTGGTGATTATCAACATATTCATTCCCAACCGATTTTGAGTTTGTTAATGCAAGGAGCTACTTCGTTTTCATCCCTCTCATCAGCATTAACCTCTGCAATGAGTTCTGCAGAAAGATTAGTTGAGGACCTTGAATCATATTTACATGGGCAGCAGCCTGTGGTAAGCAGCACGCCGCCGTCAAATCCTCTGGATGCTGGTGTTTCTTCTTTAAGGGATGCTGCTGCACACTACAATTATGCAGATAATCTTTCTCGTGTTGCGGCTGCACTCCGTTTTGCAGCTGCGGCACCGGATCCTTCTTTAAGCAGAAACGAATTCACAGTTGCTGTTGATGAAATGCGCATAGCCAATGATCTAGCGCAGATTAGAGCGTCATCACCCTCCAATCGAAGAAGAACTAGTGCATCGAGAGGCGGTTCAAATGAGCTGAGAAGGAGGAGGTTAAGATGA 1263 0.4608 MELDLNQEPLELEPSHNSVAEIDSLLNELESAHGHIHDRIRHLEAVYTSARLRYRWPPVHTPIQITNFTGEEAVTANDEDGGGRDNPVAEESEVANEAKSKGTHLIAKALGIEQTDASVADQSSASFFDCNICLDIARDPVLTCCGHLFCWPCFYQVSYAYSNAKECPVCKGEVTEKGIIPIYGNGSSSTSNSKLESNETSLKVPPRPPAPRVESIRQQLINQGASSSTIRNLRRFHNLISGRGERVQSETPNMPTGSRNNVVHAQTQREIGDYQHIHSQPILSLLMQGATSFSSLSSALTSAMSSAERLVEDLESYLHGQQPVVSSTPPSNPLDAGVSSLRDAAAHYNYADNLSRVAAALRFAAAAPDPSLSRNEFTVAVDEMRIANDLAQIRASSPSNRRRTSASRGGSNELRRRRLR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121814g00001 420 Pfam Zinc finger, C3HC4 type (RING finger) 130 175 - -
Stsc121814g00001 420 MobiDBLite consensus disorder prediction 392 407 - -
Stsc121814g00001 420 SUPERFAMILY RING/U-box 125 178 - -
Stsc121814g00001 420 SMART ring_2 130 170 IPR001841 -
Stsc121814g00001 420 MobiDBLite consensus disorder prediction 391 420 - -
Stsc121814g00001 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 101 290 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc121814g00001 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 222 IPR013083 -
Stsc121814g00001 420 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Stsc121814g00001 420 MobiDBLite consensus disorder prediction 188 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121814g00001 Stsc-Chr121814 3499 5594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121814g00001 88 238 C3H Transcription Factor Family AT3G58030 43.871 3.24e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121814g00001 - - gmx:100794016 340.502