Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121806g00001 ATGGCAGCTGAATTATTGGTTAATGCTTCGTTCGTCCCACAATCCGAGTTACTTTCCCAGATTGTCTTAAATATATTTGATGCTGTCAAAGTTGCAAATGAGGTTGTCATTCACAAGGAACATGTCAACAAGTTCTCGATTCACTTGGGGAAGATCGCTTCTATATTGAAGTCTTTACCAATAGAGGATATACACAATCCTGAGAGCTTGAAAAATGCCTTGGATGTTCTCAACCAAGCTATTATGGTTGCGAAGCAGCTGGTTTTCGATTGCAATTGTAGAAGTAAGGTTTATCTCTTGATTAATTCGAGAAGGATCGTTGCATGCTTGAAATGTTGTGGAGAAGATATAAGCCGAGCCATGAGCCTCATTCCTCTTTCATCATTGGACATCAACTCTGGTTTACAAGCAAGGGTAAGCGAGTTATGCCATAACATTTTAGAAACTGAGTATCAAAAAGCTGCTTTAGATGAAGAAATTTTGGAAAAAGTTGAGAAGGCGATACAGGAGAGGAATTTCGACCGGTTGCATGCGAATCAGTTGCTGTCTTCTATTGCAAATGCCATTGGTGTCCCCATGGAGAGTGATGCTTTGAAGAAAGAGTTCCAAGAGTTGACATGCGAAATGGAAAGAGCACGGTCCAGGAAAGATGTTGTAGAAGCTCTACACATGGAGCAGCTCATTGCAGTGCTTGAAAAGGCTGATTTGATAACCTCAGTACAAGAGAAAGAAAACAGGTACATTGAAAAGCGAAATTCTTTGGGAAGAACACCTTTAGAGCCTCTGCATTCATTTTACTGCCCAATCTCTGGAGATATTATGGTGGACCCTGTCGAAACTTCCACTGGCAAGACATTCGAGAGAAGTGCGATAGAAAGGTGGTTTGCCCAAGGGAACACTCAGTGTCCATTGACCATGTTGCCGGTAGATACTAAAATCTTAAGGCCGAATAAGACACTTCGCCAGTCAATTCAAGAGTGGAAGGACCGGAATACAATCATCACCATTTCTACCATCAAGTCCCAACTTCAAACAAATGAAGACGAGGAAGTGCTCGAATCCTTAAAGAAGTTGCAGGATCTATGCCTAGAAAGAGAGGTACACCTGGAATGGTTAAAAATGGAGAATTACATAGCTGTTCTTGTTGGACTTCTTGGTTCTAGAAATCGGGAAATAAGGAAACATGTTCTGCTCATACTGTCTTTGCTTGCAAAGGATAACACAGATAACAAGGAAGGCATTGCAAAAGTGGATGGTGCACTTCGATCGATTGTTCACTCACTCGCTCGTCAAATTGAAGAAAGCAAATTAGCATTGAAGTTGCTGTTGGAGTTATCCAGAAATAACATGTTGCTTGAACTCATAGGAAACATTCAAGGAGGCATACTTCTAATGGTGACAATGTTAAATAGTGATGAGGTTGAAGCTGCTGAAATTGCACATGAGCTTCTGGCAAACCTATCTTTCCTTGACCAAAATGTTATAGAGATGGCAAAGGCAAATTATCTTAAGCCTTTGTTACTGAACCTTTTGACAGGATCAGAAAATATGAAGATACTCATGGCTGAAACTATGTCCGAAATCGAATTGACTGATCAGAATAAATTGTATTTAGTTAAGGATGGGGCAGTGAGGCCTCTTCTTCAGCTACTCTTGAAAAATGATGTGGAAATCAAGAAAGTGGTTGTGAAGTGTTTACTTAAGCTCTCAAGCTTGTCGGAGAATGGCCTGCTGATGATTAAAAAAGGCGTTACTCGACCGCTGTTAGAATTGCTATACTCTCACAGTTTACAGTCGCCAGCTCTACAAGAACTGATAGTTGCAACAATAATGCACCTTGCCTTATCAACCACTCACCAACAAGCTGAAGAGGAACGTGTATCGTTGCTTGATTCGGAGGAAGAAGTATATAAATTCTTCTCTCTAGTTTCTTTGACAGAAGTTAATGTACAAAGCATGATTCTCAAAGCTTTTCAGGCACTGTGCCAGTCTCTCTCCGGCTTCACAATCAGAATGTGGTTGAGACAGATCTCGGCTGCTAAAGTATTGATCCAATTGGTAGAGCTTAATACCCAAACAGTTCGGGTAAATGCCTTGAAGCTCTGTTATTGCTTGACAGAAGATGGTGACTACAGGAATATCTCATCACACATAACTGAAAGGTTCATTAAGCATAAACATGCCTCACACCGAAAGCAAGTCACAGAGAATTCTCTCCAAGCCCTTTGTCGATTTACTGTCTCGGCAAATCAAGAGTGGCAGGAGAGAGTAGCAGAAGCAGGCATGATCCCAGTGCTGGTGCAATTGCTTGTCTCTGGAACACCTCTTTCAAAACAAAATTCAGCTATTTCGATCAAGCAGCTTTCCGAAAGTTCATTCTCCTTGAGCAAGCCGATAAAGAAGCCTAGTGTCTTCAAACGCTGCTTCACACCACAGCAACTAGGCTGCCCTGCACATCTAGGTACATGTATGATTGAGTCCTCATTCTGCATTTTACAAGCCAAGGCCTTGGAGCCCCTTGTCCGGATGCTCTCGGATCAAGATGTCGGAACATGCGAAGCATCTTTAGATGCGCTAATGACTTTGCTTGACGGCCAAACAGCACATAGTGGAAGTAAGGTGCTCGCAGATGCAAATGCCGTCGAACCAATGATAAAGCTGTTGAGTGTTTCAGCTTCAAGGTTGCAGGAGAAAACTCTAATAGCATTAGGCCAAATCTTTCAGGTTGATGAAGTAAGAAATAAGTATAAGGCTATGGCCACAATGCCCTTGGTGGACATAACTCAGAGCAAAGAGAACCGTTTGAAAAGCCTTGCAGCTAAAGGCCTTGCTCAATTAGGTGTACTTGATAAACAGTCTTCTTATTTTTAG 2871 0.418 MAAELLVNASFVPQSELLSQIVLNIFDAVKVANEVVIHKEHVNKFSIHLGKIASILKSLPIEDIHNPESLKNALDVLNQAIMVAKQLVFDCNCRSKVYLLINSRRIVACLKCCGEDISRAMSLIPLSSLDINSGLQARVSELCHNILETEYQKAALDEEILEKVEKAIQERNFDRLHANQLLSSIANAIGVPMESDALKKEFQELTCEMERARSRKDVVEALHMEQLIAVLEKADLITSVQEKENRYIEKRNSLGRTPLEPLHSFYCPISGDIMVDPVETSTGKTFERSAIERWFAQGNTQCPLTMLPVDTKILRPNKTLRQSIQEWKDRNTIITISTIKSQLQTNEDEEVLESLKKLQDLCLEREVHLEWLKMENYIAVLVGLLGSRNREIRKHVLLILSLLAKDNTDNKEGIAKVDGALRSIVHSLARQIEESKLALKLLLELSRNNMLLELIGNIQGGILLMVTMLNSDEVEAAEIAHELLANLSFLDQNVIEMAKANYLKPLLLNLLTGSENMKILMAETMSEIELTDQNKLYLVKDGAVRPLLQLLLKNDVEIKKVVVKCLLKLSSLSENGLLMIKKGVTRPLLELLYSHSLQSPALQELIVATIMHLALSTTHQQAEEERVSLLDSEEEVYKFFSLVSLTEVNVQSMILKAFQALCQSLSGFTIRMWLRQISAAKVLIQLVELNTQTVRVNALKLCYCLTEDGDYRNISSHITERFIKHKHASHRKQVTENSLQALCRFTVSANQEWQERVAEAGMIPVLVQLLVSGTPLSKQNSAISIKQLSESSFSLSKPIKKPSVFKRCFTPQQLGCPAHLGTCMIESSFCILQAKALEPLVRMLSDQDVGTCEASLDALMTLLDGQTAHSGSKVLADANAVEPMIKLLSVSASRLQEKTLIALGQIFQVDEVRNKYKAMATMPLVDITQSKENRLKSLAAKGLAQLGVLDKQSSYF 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121806g00001 956 SUPERFAMILY RING/U-box 251 333 - -
Stsc121806g00001 956 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Stsc121806g00001 956 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Stsc121806g00001 956 Coils Coil 195 222 - -
Stsc121806g00001 956 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Stsc121806g00001 956 Gene3D - 14 127 IPR036537 GO:0007166
Stsc121806g00001 956 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 333 IPR013083 -
Stsc121806g00001 956 SMART arm_5 572 615 IPR000225 GO:0005515
Stsc121806g00001 956 SMART arm_5 868 908 IPR000225 GO:0005515
Stsc121806g00001 956 SMART arm_5 750 790 IPR000225 GO:0005515
Stsc121806g00001 956 SMART arm_5 531 571 IPR000225 GO:0005515
Stsc121806g00001 956 SMART arm_5 823 864 IPR000225 GO:0005515
Stsc121806g00001 956 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 718 - -
Stsc121806g00001 956 SUPERFAMILY ARM repeat 335 522 IPR016024 -
Stsc121806g00001 956 Gene3D - 434 808 IPR011989 -
Stsc121806g00001 956 Gene3D - 334 433 IPR011989 -
Stsc121806g00001 956 CDD RING-Ubox_PUB 265 314 IPR045210 -
Stsc121806g00001 956 Gene3D - 819 954 IPR011989 -
Stsc121806g00001 956 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Stsc121806g00001 956 Pfam MCAfunc domain 29 159 IPR045766 -
Stsc121806g00001 956 SUPERFAMILY ARM repeat 531 911 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121806g00001 Stsc-Chr121806 18859 22394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121806g00001 261 882 U-box Gene Family AT1G68940 26.434 6.40e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121806g00001 - - gmx:100818273 1241.87