Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121805g00001 ATGGCCAAGCGTTGGTGGGACCAAGAAAACCACCACACTCCGTCAAGCAGTGCCAACGGCGACCACGACAACAACGACGGAGGTGATGACAATACCAACTCCAGTGCCGGCGACCGAAGAGGAGGAAGCGGCCGTAGGCCACGAGGCCGGCCACCGGGGTCGAAGAACAAGCCAAAACAACCGCTGGTGATTAGGAAGGACTTCCCAAACGCCCTTCAAAGCCATATTCTAGAGATCAGCGACGGAGCTGACGTGGCAGATTGCCTTTCCACTTTCGCAACCCGCCGCCACCGTGGCGTCTCCGTACTAAGCGGAACCGGCACTGTCACCAACGTCACTCTCGGGCAGCCCGCGGCTCCCGGAGGCGCCGTTTCACTCCAAGGAACGTTCCAGATCCTGTCCCTCTCCGGCGCGATTCTCCCGCCGCCATCGCCGCCAGGCGCCGCCGGACTGGCGGTTTATCTCGCCGGAGTTCAGGGAGAGGTGATAGGCGGTAGGGTGGTGGGATCGCTGGTGGCTTGTGGAACAGTGATGGTGGTTGCAGCAACGTTCGCTAATGCCACGTATGAAAGGCTACCGTTTGAAGAAGAAGAGGAAGAAAAAGATGAAGAGATGCGGGTGCAGGTGCAGGTGGAGCCGCAGAAGGAGCAACAATCTGGTGTGAACGAGGGTTGTAGTGGACCACCTGAAGCACCACCACCAGCAGAAGCACAACAACAGGTTTATAGTAATGTTCGTTCCGGTTTGATGGCTAATAACATTGAAATGGCTGCTCATGATGATGATGATGAAGAAGATGAAGATGATGTGTTTTGGTGA 819 0.5653 MAKRWWDQENHHTPSSSANGDHDNNDGGDDNTNSSAGDRRGGSGRRPRGRPPGSKNKPKQPLVIRKDFPNALQSHILEISDGADVADCLSTFATRRHRGVSVLSGTGTVTNVTLGQPAAPGGAVSLQGTFQILSLSGAILPPPSPPGAAGLAVYLAGVQGEVIGGRVVGSLVACGTVMVVAATFANATYERLPFEEEEEEKDEEMRVQVQVEPQKEQQSGVNEGCSGPPEAPPPAEAQQQVYSNVRSGLMANNIEMAAHDDDDEEDEDDVFW 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121805g00001 272 CDD DUF296 75 184 IPR005175 -
Stsc121805g00001 272 MobiDBLite consensus disorder prediction 195 244 - -
Stsc121805g00001 272 Pfam Plants and Prokaryotes Conserved (PCC) domain 74 185 IPR005175 -
Stsc121805g00001 272 MobiDBLite consensus disorder prediction 1 64 - -
Stsc121805g00001 272 MobiDBLite consensus disorder prediction 258 272 - -
Stsc121805g00001 272 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 234 IPR014476 GO:0003680
Stsc121805g00001 272 PIRSF ESCAROLA 2 267 IPR014476 GO:0003680
Stsc121805g00001 272 ProSiteProfiles PPC domain profile profile. 69 206 IPR005175 -
Stsc121805g00001 272 SUPERFAMILY AF0104/ALDC/Ptd012-like 70 198 - -
Stsc121805g00001 272 Gene3D - 73 209 - -
Stsc121805g00001 272 MobiDBLite consensus disorder prediction 253 272 - -
Stsc121805g00001 272 FunFam AT-hook motif nuclear-localized protein 72 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121805g00001 Stsc-Chr121805 5455 6833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121805g00001 1 199 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 57.466 5.18e-67 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121805g00001 - - gmx:100787100 224.557