Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121800g00003 ATGCTCAAGAAGTGTTCCTATGAAGTGACTACATGTTGTTTGGCGAGGCACGCTCTAAACTTGCTTCGCGAAAGGAAAGATGGATATGATATTGTGATCAGTGATGTAAACATGCCTGACATGGATGGATTCAAACTTCTAGAGCATGTTGGACTTGAGATGGATCTTCCTGTGATCATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACACGGAGCTTGCGATTATCTGCTTAAGCCTATAAGGATGAAGGAACTGAGAAACATATGGCAGCATGTCTTTAGGAAAAGGATAAACGAGGCAAGAGAATTCGAGAGTTTTGAAGGTTTCGAGAGCATTCACCTGATGAGAAACGGATCGGAGCAATGTGATGACGGGAACCTGTTTGCACTCGAAGACATGACCTCAACTAAGAAAAGAAAAGATGCAGATAACAAACATGATGACAGAGAACTGATGGATCCATCTTCAACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAAAAGTTTGTTAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCAAAGAAAATACTAGATCTGATGAATGTTCCTTGGCTGACTAGAGAAAATGTTGCAAGCCACTTGCAGAAGTATCGGCTTTACCTAAGCCGGCTTCAGAAAGAAAACGATCTGAAGTCTTCCTCGATTGGAATAAAGCCAGAGTTAGCTTCACCCGATCTAGGGAGTTTTCTTGGAGTTCAGAGCTCAGTGAACAAGAAACAAAATGATGTTTCAATTGACAGCTGCAGTTACTCGGATGGAATGCTGCAACTTCAGAACCTGGAAACCAAAGCTCATGAAGGTAGCAGTGATCCCAACGGAACTGCCACTACAGAAAAGGGAAGAACCATGACTGGCAACATTGTTTCCGACAAGAAGATGAGAAAGAGTTTGCAGATGGGATTTAACCAACCTTTTGACTCTCTTGAGAAGGAAGGAAACCACACAGCAGTGATTGATTGCTCCATTTCAGCACAACCCTCTTGGAATAAAGTTCCGGAAATTCAACTCAAAGATCAGAAGCCACTTGTTCAGTTAGAAGGTAACTTAAGCCAGAAGTTTCCAATAACTGGTAAGAAGCACCAAATCCAAGTTGATCATCAATCACAGTCGATTGCTTCGATTAGTTCTGCTCCATCTTTGACAGAGGAGGAGGTCTCTGCGTGCTTCGAAACAAAACCTTTGTGTGCAGATTACAAGCGTGAATACAAGAGTTCCGTGTGTTCAATAGGGCCCGCAGTTGACAACAACACGTTCCCTATTGAACCCGGAAGCCTTATGATGAATGATCCATCAACACAACCAATTTCAACTACAAACCTACGATTGAAAACACAAGCATCTAACCTCAACTGTATTTCAGATATGGAGTTTTACCAGAGAAACCTACTTTTGGATGCAGTTTCGGTCCCATTGGACGACGATCTGCATTTCAGTTGGCTACATGGGGAATGCTCTAACATTAACTTCAGCCTGCAGAATGTAGGGTATTATGATCCAGGGCTTATTGCAGAAGTTCCAAATCATTACTATGATTCAGCAGATTATTCAGTCATAGATCAAGGCCTATTCATAGCATGA 1635 0.419 MLKKCSYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRINEAREFESFEGFESIHLMRNGSEQCDDGNLFALEDMTSTKKRKDADNKHDDRELMDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDLKSSSIGIKPELASPDLGSFLGVQSSVNKKQNDVSIDSCSYSDGMLQLQNLETKAHEGSSDPNGTATTEKGRTMTGNIVSDKKMRKSLQMGFNQPFDSLEKEGNHTAVIDCSISAQPSWNKVPEIQLKDQKPLVQLEGNLSQKFPITGKKHQIQVDHQSQSIASISSAPSLTEEEVSACFETKPLCADYKREYKSSVCSIGPAVDNNTFPIEPGSLMMNDPSTQPISTTNLRLKTQASNLNCISDMEFYQRNLLLDAVSVPLDDDLHFSWLHGECSNINFSLQNVGYYDPGLIAEVPNHYYDSADYSVIDQGLFIA 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121800g00003 544 ProSiteProfiles Response regulatory domain profile. 1 99 IPR001789 GO:0000160
Stsc121800g00003 544 CDD REC_typeB_ARR-like 1 99 - -
Stsc121800g00003 544 Gene3D - 165 224 - -
Stsc121800g00003 544 MobiDBLite consensus disorder prediction 141 160 - -
Stsc121800g00003 544 SMART REC_2 1 95 IPR001789 GO:0000160
Stsc121800g00003 544 SUPERFAMILY CheY-like 1 107 IPR011006 -
Stsc121800g00003 544 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 286 IPR045279 GO:0009736
Stsc121800g00003 544 Pfam Response regulator receiver domain 2 94 IPR001789 GO:0000160
Stsc121800g00003 544 Gene3D - 1 164 - -
Stsc121800g00003 544 MobiDBLite consensus disorder prediction 281 303 - -
Stsc121800g00003 544 Pfam Myb-like DNA-binding domain 167 217 IPR001005 -
Stsc121800g00003 544 FunFam Two-component response regulator 161 224 - -
Stsc121800g00003 544 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
Stsc121800g00003 544 MobiDBLite consensus disorder prediction 281 306 - -
Stsc121800g00003 544 NCBIfam myb-like DNA-binding domain, SHAQKYF class 165 218 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121800g00003 Stsc-Chr121800 8760 12909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121800g00003 58 544 Response Regulator Gene Family AT1G67710 38.417 4.19e-72 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc121800g00003 Response_reg 2.1e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121800g00003 K14491 - gmx:100797421 753.436