Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121781g00001 ATGGCGGCGACAGAGCCGGATCTCGAATACTGGTGGAGGACGATGATCGGATTCGACGAAGTATCCAACGGATCTCCTAACAACGACGACGTCAAGCCCGCCGATTTGAGATGCGGCGGCGGTTTAGCCGCCACCGTCGACGGACCCGTCGCCACCGGCGGATTCTCCGGCTATGTCGGCGGCGCCGCTGGCGCTTTCGAAAATCCGGAATATGTGGTAAATTCATTTTCAACTTGTGGTGGAATAGCAGATGCCAATACAGTTGTCTCTTCCCAAAACCTCATTACCAAGAATCCCACCATTTCGGCTACAAATGATTCCCAGTCATCCATGTGTGGCACTGTTGGAAGCCCGGTATCTTCTAACAAACCAAGTGACAGAGACAATCAAGCCAAAGTAGCTTCAAGTGGTTCCTCTGATCCTTCTGATGAGGATGATGAAACTGGTCCTTGTGAACAGAGCACAAATCCTGTTGATATGAAGCGCCTTAGAAGGAAGGTTTCTAATCGCGAATCGGCAAGGAGGTCAAGAAGAAGAAAACAAGCGCATTTAGCTGACCTTGAGATGCAGGTTGAAAAGCTGAAACTGGAAAATGCAACCCTATACAGGCAGTTTAACGATGCTAGACAGCAATTTCACGACGCGGATACTAATAACCGAGTGCTAAAATCAGATGTTGAAGCTCTGAGAGCTAAGGTGAAGTTAGCTGAGGATATGGTCACTCGAGGCTCTGTTACAACGCTAAACAACCAACTTCTTCAGCCTCATTGTCAAATGAACGCGCCGCCACAGCTTAACACAACGGCTAGTAGTCTGCGTCGTATGGCACACGTGTCACCAACCATCACTGTCCATGCAAACGATGCCTCCTTATACAATACTGGTGGTGGAGGTGGACAGAATCATCCAGTTCTTGGTGGGCTTGGAGACTTGGATATTCCTTACAATGATATCAACAATGGAGTCATAAACAATGCTCTAAACTCCATGAACATCTGGCAGCAGTAA 1008 0.4821 MAATEPDLEYWWRTMIGFDEVSNGSPNNDDVKPADLRCGGGLAATVDGPVATGGFSGYVGGAAGAFENPEYVVNSFSTCGGIADANTVVSSQNLITKNPTISATNDSQSSMCGTVGSPVSSNKPSDRDNQAKVASSGSSDPSDEDDETGPCEQSTNPVDMKRLRRKVSNRESARRSRRRKQAHLADLEMQVEKLKLENATLYRQFNDARQQFHDADTNNRVLKSDVEALRAKVKLAEDMVTRGSVTTLNNQLLQPHCQMNAPPQLNTTASSLRRMAHVSPTITVHANDASLYNTGGGGGQNHPVLGGLGDLDIPYNDINNGVINNALNSMNIWQQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121781g00001 335 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 164 179 IPR004827 GO:0003700|GO:0006355
Stsc121781g00001 335 MobiDBLite consensus disorder prediction 99 183 - -
Stsc121781g00001 335 MobiDBLite consensus disorder prediction 99 138 - -
Stsc121781g00001 335 CDD bZIP_plant_GBF1 162 213 IPR045314 GO:0003700|GO:0006355
Stsc121781g00001 335 Coils Coil 219 239 - -
Stsc121781g00001 335 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 159 211 IPR004827 GO:0003700|GO:0006355
Stsc121781g00001 335 Gene3D - 160 216 - -
Stsc121781g00001 335 SMART brlzneu 157 221 IPR004827 GO:0003700|GO:0006355
Stsc121781g00001 335 Coils Coil 170 211 - -
Stsc121781g00001 335 SUPERFAMILY Leucine zipper domain 161 212 IPR046347 GO:0003700|GO:0006355
Stsc121781g00001 335 Pfam bZIP transcription factor 160 206 IPR004827 GO:0003700|GO:0006355
Stsc121781g00001 335 FunFam BZIP transcription factor 159 210 - -
Stsc121781g00001 335 PANTHER BASIC LEUCINE ZIPPER 63 90 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121781g00001 Stsc-Chr121781 6992 11092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121781g00001 106 308 bZIP Transcription Factor Family AT5G24800 52.632 1.78e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc121781g00001 bZIP_1 4.4e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121781g00001 K25784 - gmx:778193 316.235