Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121774g00003 ATGGCAAAGTGTCACCGGAACAACGTCGGATCCGTCGCACTCGACCACCGCAACCCTAACAAGAATGCCGCCACAGCCGGCCACTTCCGCCGCTGGAACTCCATCTCCGCCTCCTCTATCCGTCGCATCGTTCTCGACGCCGTTAGCTGCGGCACCTCGCGCTACGTTTACCACCAGCGCGACGACGACGACGACGACGAAGGATCCAGCTCCGCCGCAACTTCGACAGCGAGTCTGGCCTCCGGTAGCCGGAGGGAGAACCGGCCAGAGCAGAAAACAGAGAAGCTCGCGGATCTGCTGAACTTAACGGAGTGCGAGAATCAGGCGGAGGCGAAGAAGAAGGAAGAGGCGCTGGTGGAGCTGAAGCTAGTCGTGAAGGACCTGCAGCAGGGAGAGGACTTGGCGAAGCGCCGCATGGCGGCGGCGACGGTGAGGTCTCTTGCGAAAGAACGATCGGAAGTTAGAGGAACGCTCGCTATGCTTGGAGCCATTCCTCCGCTAGTCGGAATGCTCGATTCCGAAGACGTTCATTCTCAGATTGCTTCGCTCTATGCGTTGCTCAATCTCGGGATCGGTAACGATGCAAACAAAGCAGCCATCGTTAAAGTCGGTGCTGTTCACAAGATGCTCAAGTTAATTGGATCACCGGATGCCACTGATTCATCAGTTTCTGAAGCAATTGTTGCTAATTTCCTTGGATTGAGTGCTTTGGATTCAAATAAACCAATAATTGGATCCTCTGGTGCAATTCCATTCCTAGTTAGAACCCTTCAAAATTTGGATTACAAATGTAGCCAACAAGCCAAGCAAGATGCTCTACGAGCTCTCTACAATCTATCAATCTTTCCAACCAACAATTCCTTCATTTTGGAAACTGAGTTGGTCCCCTTTTTGGTTAGTTCAATAGGAGACATGGAAGTGAGTGAGAGAGTGCTTTCAATTCTAAGCAATCTTGTGCCAACCCCAGAGGGTAGAAAAGCTATCAGTGCTGTGAAGGACGCAATCTTTATTCTGGTGGATGTGTTGAATTGGACGGATTCGCCGGCGTGCCAAGAGAAGGCGTCATACATTTTGATGATTATGGCACACAAATCCTATAGTGACAGGCAGGTCATGATTGAAGCTGGGATTCGATCATCTCTGCTTGAATTGACCCTCCTCGGTTCTACATTGGCACAGAAAAGGGCCTCAAGAATCTTGGAATGTTTGAGGACAGACAAAGGGAAACAAGTTTCTAGAAGCTGTGGTCGAGGAAGCTTGGGGACCGATATCTCTGCGCCTATTTGCAGCGCGTCGTCGTCTTTTACAAAGGCTTCGGGTGGAGGAGGTAAAGGCTATTTGGAGGAAGAGGAGGAGGAGGAAGACATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAATTAGTTCAGCAGAGTTTGCAAAACAACATGAGGAAAATTGTCAAGAGGGCCAACTTGCGTCAAGATTTTGTTCNNNNNNNNNNACTCACTTCAAGTTCAACTTCCAAGAGCCTGCCATTTTGA 1521 0.4964 MAKCHRNNVGSVALDHRNPNKNAATAGHFRRWNSISASSIRRIVLDAVSCGTSRYVYHQRDDDDDDEGSSSAATSTASLASGSRRENRPEQKTEKLADLLNLTECENQAEAKKKEEALVELKLVVKDLQQGEDLAKRRMAAATVRSLAKERSEVRGTLAMLGAIPPLVGMLDSEDVHSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIGSPDATDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLQNLDYKCSQQAKQDALRALYNLSIFPTNNSFILETELVPFLVSSIGDMEVSERVLSILSNLVPTPEGRKAISAVKDAIFILVDVLNWTDSPACQEKASYILMIMAHKSYSDRQVMIEAGIRSSLLELTLLGSTLAQKRASRILECLRTDKGKQVSRSCGRGSLGTDISAPICSASSSFTKASGGGGKGYLEEEEEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLRQDFVXXXXLTSSSTSKSLPF 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121774g00003 506 MobiDBLite consensus disorder prediction 58 92 - -
Stsc121774g00003 506 Gene3D - 265 415 IPR011989 -
Stsc121774g00003 506 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 248 280 IPR000225 GO:0005515
Stsc121774g00003 506 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 506 - -
Stsc121774g00003 506 Coils Coil 111 131 - -
Stsc121774g00003 506 Gene3D - 57 264 IPR011989 -
Stsc121774g00003 506 Coils Coil 447 470 - -
Stsc121774g00003 506 SUPERFAMILY ARM repeat 120 404 IPR016024 -
Stsc121774g00003 506 MobiDBLite consensus disorder prediction 1 25 - -
Stsc121774g00003 506 SMART arm_5 237 281 IPR000225 GO:0005515
Stsc121774g00003 506 SMART arm_5 151 191 IPR000225 GO:0005515
Stsc121774g00003 506 SMART arm_5 193 236 IPR000225 GO:0005515
Stsc121774g00003 506 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121774g00003 Stsc-Chr121774 18925 20811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121774g00003 137 401 U-box Gene Family AT3G46510 35.897 3.07e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121774g00003 - - qsa:O6P43_015754 585.489