Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121773g00004 ATGCAGGATTTGAGCCCCCGCAACAGTACTGGTCAAGCCAAAAGAATTTCAGTGGCAAGCTTCATTCTGCTTCTCTGGTGTCCAATTCATGGAATTTCTATGCCAAGAACGGGGATTTGCTCGGGAAAACTGTTTTCTCTGACCATTCAGATCCTAACTCATTTTGGGTTGCTATTTTGGACCCTACAGGTGCCATCTCTTTCTATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAGACCCTTGTGGCATTCCTGAGCCTTGTGATCCTTACAACGTTTGCTTCTTTGAGAACTGGTGTGAATGCCCTGCACTTCTCAAATCTCGCTTTAACTGCAAGCCTCCCAATATCTCAACCTGTTCTAGGACTTCAACAGAACTTGTATATGTTGGTGAGAAGCTTGACTATTTTGCACTTGACTATGTTGCACCCGTTTCAAAATCAAACCTCAATGCCTGCAAAGATGCTTGCCTGGGAAACTGCTCTTGCCAAGTGCTTTTCTTTGATAACAGCACCGGGAGATGCTTTCATTTTGATCAGACTGGAAGCTTCCAACGATTCAAGGGGGGCGCCGGCGGTTATACTTCATATATGAAGGTGCCCGTTGATGATGGAAATGACCACAAAAAGCAAAAGAATGGCACGCTGCTAATTGTTGCCATAGTAGCCTTCACAGTTTTGGTCATTGTTAGTCTTGTGGCAGGGTTCTGGTACTATAACAAGAAGATGAATCTTGCTAAGTATGAACAAGACACGTTGGAGGAGGATGATTTCTTTGATGGTCTCTCCGGAATGCCTACTCGGTTTACCTATGGTGCTCTCTCTACGGTGACAAAGAACTTCTCCACAAAAATTGGGGAAGGAGGTTTTGGCTCTGTGTATCTTGGTGTGCTTGAAGATGGAACTCAGTTGGCTGTGAAAAAATTGGAAGGTCTTGGACAAGGGACAAAAGAGTTCAAGGCTGAAGTGTCTATAATTGGAAGCATTCATCATGTTCATCTGGTCAAGCTTAAAGGCTTCTGCGCCGAGGGTCCTCATCGCCTTCTAGTCTATGAATACATGGGGAGGGGCTCTCTGGACAAATGGATCTTCAAGAATAGTGAAAACACTTTCTTGTTGACTTGGGATACAAGGTTCAACATTGCACTAGGCACGGCGAAGGGATTGGCCTATCTTCATGAGGAGTGTGAGGTGAAGATTGTGCATTGTGATATTAAGCCGCAAAATGTTCTTCTTGATGATAATTTCAGTGCTAAAGTTTCAGATTTTGGACTGGCTAAGCTAATGAACCGTGAACAAAGCCATGTGGTTACAACTCTAAGGGGCACAAGAGGGTATCTAGCACCAGAGTGGATCACTAACTATGCAATTTCTGAGAAGAGTGATGTGTTCAGCTATGGCATGGTCTTGCTTGAGATCATTGGAGGGAGGAAGAATTATGATCAGTGGGAAGGGCCGGAGAAAGTGCATTTTCCTTCTTATGTGTTCAGAATGATGGAGGAAGGGAGACTGAGAGAAGTTATTGACAAAAGGATAGACATTGATGATAAGGATGAAAGGGCTATGAATGCTCTCAAAGTTGCTCTATGGTGTATACAAGATGATGTGAGCTTGAGGCCTTCCATGACAAAGGTAGTTCAAATGCTTGAAGGTATCTGCCCTGTCTCTGATCCACCAATATCTCAGTCTAGTTGTTTCTCAGCCTTCCTGAAAATGAGCAGCGGAGAAGCAACTTCTTCAGGACAGGCAAGCCTCTACAGTAACATACCACTTTCTTGTGTTCAATTATCTGGACCAAGATGA 1866 0.4191 MQDLSPRNSTGQAKRISVASFILLLWCPIHGISMPRTGICSGKLFSLTIQILTHFGLLFWTLQVPSLSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDPCGIPEPCDPYNVCFFENWCECPALLKSRFNCKPPNISTCSRTSTELVYVGEKLDYFALDYVAPVSKSNLNACKDACLGNCSCQVLFFDNSTGRCFHFDQTGSFQRFKGGAGGYTSYMKVPVDDGNDHKKQKNGTLLIVAIVAFTVLVIVSLVAGFWYYNKKMNLAKYEQDTLEEDDFFDGLSGMPTRFTYGALSTVTKNFSTKIGEGGFGSVYLGVLEDGTQLAVKKLEGLGQGTKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMGRGSLDKWIFKNSENTFLLTWDTRFNIALGTAKGLAYLHEECEVKIVHCDIKPQNVLLDDNFSAKVSDFGLAKLMNREQSHVVTTLRGTRGYLAPEWITNYAISEKSDVFSYGMVLLEIIGGRKNYDQWEGPEKVHFPSYVFRMMEEGRLREVIDKRIDIDDKDERAMNALKVALWCIQDDVSLRPSMTKVVQMLEGICPVSDPPISQSSCFSAFLKMSSGEATSSGQASLYSNIPLSCVQLSGPR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121773g00004 621 SMART serkin_6 300 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121773g00004 621 CDD PAN_AP_plant 166 222 - -
Stsc121773g00004 621 ProSiteProfiles Protein kinase domain profile. 300 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121773g00004 621 Pfam Protein kinase domain 303 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121773g00004 621 FunFam S-receptor-like kinase 5 375 579 - -
Stsc121773g00004 621 Gene3D Phosphorylase Kinase; domain 1 263 374 - -
Stsc121773g00004 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Stsc121773g00004 621 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 103 582 - -
Stsc121773g00004 621 SUPERFAMILY Protein kinase-like (PK-like) 284 571 IPR011009 -
Stsc121773g00004 621 FunFam serine/threonine-protein kinase PBS1-like 268 374 - -
Stsc121773g00004 621 CDD STKc_IRAK 306 573 - -
Stsc121773g00004 621 Coils Coil 100 101 - -
Stsc121773g00004 621 Coils Coil 69 69 - -
Stsc121773g00004 621 ProSiteProfiles PAN/Apple domain profile. 141 223 IPR003609 -
Stsc121773g00004 621 Gene3D Transferase(Phosphotransferase) domain 1 375 579 - -
Stsc121773g00004 621 ProSitePatterns Protein kinases ATP-binding region signature. 306 329 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121773g00004 Stsc-Chr121773 16637 18959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121773g00004 238 580 Receptor kinase-like Gene Family AT5G20050 44.505 4.47e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc121773g00004 Pkinase 9.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121773g00004 - - gmx:100816004 883.248