Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121769g00002 ATGGCGTTGTCCTCTGAGGATGGATGGGATTACGATGTGTTTATTAGCTTCCGAGGCACTGACACTGGAAAGGGCTTTGCTGGAAATCTATATTATGCTCTCAAACAGAGAGGAATCCGCACGTACTATGCTGACAACGAGCTCGAGAGAGGAGAGGAGCTTGAACCCACACTCCTCAAGAGAATTCAAGATTCCAAAATGGCCATCACTGTGTTCTCTAAAGGTTATGCTGAGTCTGCATTCTGCTTACTAGAACTTGCAGCCATCATGGAATGCATCAATGCGAGGGGACGGTTGGTTTTTCCGGTGTTCTACGATGTGTCTGCTTCTGAGGTTCGATATCAGAAAACTAATAAGGAAGAAGGAGGAGGAACATATGAAGCTGCAATGACTAAGCATGAAGAAAAGAAGGGCCATGAAACTGTGAAAAAATGGAGAGAAGCTCTCAAGAAAGCGGCTAGCTTGTCCGGCATGAGTTTCAAATCGGGGAATGTATATGAATATAAGTTCATTGGAGAGATCATTGAAGTGGTCTCCAAAAATGTCAATCGTACTCTTCTCTGGGTTGCAAAGCATCCAGTTGGATTGGAGACTCCGGTGACAGAAGTATGCAAGCTTTTGGATGTTGGACCTGGATGTGATAATGGCGGAGTCCGCATGGTAGGAATTAATGGAATCAGCGGAATAGGTAAATCAACTCTTGCCAAAGCTGTTTTTAATTATATAGCCGACCAATTTGAGAATCGATGCTTTCTTGAAAACGTGAGAGAAAATTCAAGTAAGCATGGATTGGAACATCTTCAAGAGAAGCTTCTTTTTGACACGGTTGGAGAAAGGAATATTAAATTCGTAGGCACTAGTCAAGGTGCTATACAGATAGAGAGTAGGCTAAGCAAGAAGAAGATTCTTTTGGTTCTTGATGACGTTGACAAAGAAGATCAGTTGGCAGCACTTGCTGGAGGGACACATTGGTTTGGTTCTGGTAGCAGAGTCATCATTACAACTCAAGAACGACAGGTACTAAGAAAACGTGGGATTGAAAGAAATCATGAGTTAAATGGGCTAGACTGGAAAGATGCTTGTAAATTGTTCGAGTGGAAACTGAATAAGAAAGCTGATCCACGTTTCGATGATGTTATTGATCGTGCAGTGAATTTTTGTGCAAAGCTTCCATTGGCTTTGGAAATAATGAGTTCTGATTTGGGAACTATGGATGCAGATACATGGGAATCTGCATTAGGCTATTATGAAAGAAATCTTAGCACAGAAATCCATGATATACTAAAGAGAAGCTTTGATCGTTTGACGAAAGAAGTGCAAAACGTGTTTCTTGACATTGCCTGTTGCTTGAAAGGACTCAGTTCGACAGAGGTCAACAATATGCTAAGTGCCCATTATGGTTTCCCCATAAAATATCAGATTGAACTTTTGGTGGACAAATCTCTCGTAAAGGTTGGACCTAACAATATGCTAAGTGCCCATGGTTTCCCCACAAAATATCAAAGTGAACTTTTGGTGGATGAATCTCTCATAAAGGTTGAACATAATGTGGTGGAATTACATGACAAGATACAAGACATGGGTAGAATAATTGAACAAGAAGGAAAGCACGGCCGCCGCTTTCTCTTGTCGTCCTGTGAAGCTATAGTCCAACTTTTTGAAGACAGGGGGTTTGTGAGCATGAAAGTTTTGAATATTGATGATGCTGAATGTATAAAAGCTATACATGGTCTATCTTCTGCCCCAAATCTGGAAGAACTATCATTCTCAAACTGTGTGAGTTTGACTAAAATTGATGAATCGGTTGGAAAGCTGAGGAAGCTTAAGATATTAAATGGCGAAGGTTGTTGTGAGCTTAGAAGCTTTCCATCCGTTTTGTTGCCATCTCTTGAAAAACTCAATCTCTCGTCATGCTCAAGTCTTGAGAATTTTCCAGAAATACTAGGAAAGATGGAAAAATTAGCAGAGATTGATGTAAGTTACACTAACATAATAGCTATGCCTGATCTCTCTTCTTTCCCCAATTTAGAAGAGTTATCATTTTCAAAGTGTGAGAATTTATTTGAAATTGATAAGTCAGTTGGACTTTTGGGTAAACTTAGACTGCTAAATGCCTCTGGTTGCTGCAATCTTGAAAGCTTCCCATCTCTTTTACTTCCATTGCTCGAAGAACTCGATCTCTCATGGTGTTCAAGTCTTCAGAAATTTCCAGATATATTAGGCAAGATGGAAAAAATAACAAGGCTCACTTTGCATTACACTTCCATAAAAGAATTGCCAAATTCAATTCAAAATCTTACTCGGCTTCAAACCTTGGAAATGCTTGAATGTGGAATTCTTCAGTTACCGACCAACATTACATTGTTGCCAGAACTGAGAGACATCTCGTTTTATCGAACACCTAACGAGCATGAAGCTGAAGAGAAATTGTGTTGGATGAAGTCTTCGGACAACACAATTTATGCATCACAGTGTACTATAACCGATGGAATATTTTCACAAGTATTTCCATGGTTTGCTATGTACCTGGAAGAATTAGACTTGTTCCATGTTAATTTCACATCCCTTCCGTACTACACCACAGAATGTGAACTTTTGAAGGAATTGAATTTGGATCAGTGTCATAATCTTCAAAAAATTAGATGGCTACCACCCAACTTGGAGAAACTCTCCGTGACATGTTGTAGATCTTTGGAAGATTTAGACCTCACAATCCTTCCTGGAAGTTCCAAAGAATATTACAATTTCAGGAGACTCATTGTTGATAATTGTGAGAATCTTCGGAATATCAAAGGAATTCCACCAAAAGGTTTCTCTGCAACAAATTGTCTGAGTCTGCCTTCCTCGGACATAAGCATGCTATTGAATCAGGAATTACGAGATGAGGGTGGAAACATGTGGCGATTTGTGCCGGCAGGTTCAGAAAATAGCATTGGAGAGTGGTTCCATCCCTGGAATGATGGGAATTCATCCGTCTCTTTCTGGTTTCGAAACAAGTTTCCTGCCATTTCACTTTGTGTTTTCCTTGGAGCGTTGGGTAAACGCCATATAGCATTCTATTTTTGCCCCAAATTGGAGATCAATGGCAATAGTGTAAATAAGTGGCTAATAGAGAACAAGAAGTATTGGTTTGTGCAAGAGCCAGAAGCTGATCATATATTCATTCTCCATGAAAAATACATGAAATATGAAAATAGCGTGAATGAAGAAGCACTTGTGAGGAATAAAGAATGGAATCATGCAAAGATTTTTGTTGATGTTTATTCTCCAAGGGGATGGACTGAAATTGACATGCGAATTGGAATTCATATATTCGAAGGAAAAAATAGCATGAAGGATGTCCGATTCACCGATCCTTATAATAATGTGACTGAGAAATCTAATTCAGTGGATTCAACACAGACAAGTGGTACTAGCATAGTCAAAGTGAATTTGAAGCGCATTTCTCATAATTACTCCCGAAAATTCTAA 3471 0.3947 MALSSEDGWDYDVFISFRGTDTGKGFAGNLYYALKQRGIRTYYADNELERGEELEPTLLKRIQDSKMAITVFSKGYAESAFCLLELAAIMECINARGRLVFPVFYDVSASEVRYQKTNKEEGGGTYEAAMTKHEEKKGHETVKKWREALKKAASLSGMSFKSGNVYEYKFIGEIIEVVSKNVNRTLLWVAKHPVGLETPVTEVCKLLDVGPGCDNGGVRMVGINGISGIGKSTLAKAVFNYIADQFENRCFLENVRENSSKHGLEHLQEKLLFDTVGERNIKFVGTSQGAIQIESRLSKKKILLVLDDVDKEDQLAALAGGTHWFGSGSRVIITTQERQVLRKRGIERNHELNGLDWKDACKLFEWKLNKKADPRFDDVIDRAVNFCAKLPLALEIMSSDLGTMDADTWESALGYYERNLSTEIHDILKRSFDRLTKEVQNVFLDIACCLKGLSSTEVNNMLSAHYGFPIKYQIELLVDKSLVKVGPNNMLSAHGFPTKYQSELLVDESLIKVEHNVVELHDKIQDMGRIIEQEGKHGRRFLLSSCEAIVQLFEDRGFVSMKVLNIDDAECIKAIHGLSSAPNLEELSFSNCVSLTKIDESVGKLRKLKILNGEGCCELRSFPSVLLPSLEKLNLSSCSSLENFPEILGKMEKLAEIDVSYTNIIAMPDLSSFPNLEELSFSKCENLFEIDKSVGLLGKLRLLNASGCCNLESFPSLLLPLLEELDLSWCSSLQKFPDILGKMEKITRLTLHYTSIKELPNSIQNLTRLQTLEMLECGILQLPTNITLLPELRDISFYRTPNEHEAEEKLCWMKSSDNTIYASQCTITDGIFSQVFPWFAMYLEELDLFHVNFTSLPYYTTECELLKELNLDQCHNLQKIRWLPPNLEKLSVTCCRSLEDLDLTILPGSSKEYYNFRRLIVDNCENLRNIKGIPPKGFSATNCLSLPSSDISMLLNQELRDEGGNMWRFVPAGSENSIGEWFHPWNDGNSSVSFWFRNKFPAISLCVFLGALGKRHIAFYFCPKLEINGNSVNKWLIENKKYWFVQEPEADHIFILHEKYMKYENSVNEEALVRNKEWNHAKIFVDVYSPRGWTEIDMRIGIHIFEGKNSMKDVRFTDPYNNVTEKSNSVDSTQTSGTSIVKVNLKRISHNYSRKF 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121769g00002 1156 PRINTS Disease resistance protein signature 220 235 - -
Stsc121769g00002 1156 PRINTS Disease resistance protein signature 296 310 - -
Stsc121769g00002 1156 PRINTS Disease resistance protein signature 387 401 - -
Stsc121769g00002 1156 PRINTS Disease resistance protein signature 625 641 - -
Stsc121769g00002 1156 SUPERFAMILY L domain-like 539 799 - -
Stsc121769g00002 1156 ProSiteProfiles TIR domain profile. 9 186 IPR000157 GO:0007165
Stsc121769g00002 1156 Gene3D Ribonuclease Inhibitor 667 818 IPR032675 -
Stsc121769g00002 1156 Gene3D Ribonuclease Inhibitor 536 666 IPR032675 -
Stsc121769g00002 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 446 IPR027417 -
Stsc121769g00002 1156 Gene3D - 355 436 IPR042197 -
Stsc121769g00002 1156 Gene3D - 183 347 IPR027417 -
Stsc121769g00002 1156 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 646 IPR044974 GO:0006952
Stsc121769g00002 1156 Pfam NB-ARC domain 216 439 IPR002182 GO:0043531
Stsc121769g00002 1156 Pfam TIR domain 11 183 IPR000157 GO:0007165
Stsc121769g00002 1156 Gene3D - 7 182 IPR035897 -
Stsc121769g00002 1156 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 184 - -
Stsc121769g00002 1156 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
Stsc121769g00002 1156 Gene3D Ribonuclease Inhibitor 819 945 IPR032675 -
Stsc121769g00002 1156 SMART till_3 10 155 IPR000157 GO:0007165
Stsc121769g00002 1156 SUPERFAMILY L domain-like 819 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121769g00002 Stsc-Chr121769 12693 20186 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121769g00002 10 797 WRKY Transcription Factor Family AT4G12020 27.121 6.29e-46 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121769g00002 - - ahf:112751548 1600.88