LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121766g00001	ATGGCCCACCAAGAGAACCCCACGCGCCCTCAGCGCGAGGCCAAAAAGAGAGCCGCAGCTGCACTCTCCGAGCTCCAATCCAAGAAGAAGCGCGTCGTGTTGGCCGAACTCACCAACGTCAACAATTCCAGCGTTGCACCACCACAACCACAACAACCTGCCAAACCGGTTCCCGGTGACATCCGGTTTAACCAGAACGTCGAGAAAATAAAAACCACCACCACCAGGGGCAAGAAGAGAACTGTCGGAAAAAAGCAGAAACCGGCGACGACTCCACCGGAAATCGTCGTTGATGCTACAAAGAAGTCGGAAGTTACCGTTGATCCGCAGTTATGTGCTCCTTATGCTTCTGATATCTACGATTATCTTCGTCAATTGGAGGTAGATCCAAGTAAGAGGCCATTACCAGATTATGTGCAGAAAGTGCAGAGGCATGTGAATGCAAACATGAGGGGTGTTCTTGTGGATTGGTTAGTAGAGGTTGCCGAGGAATACAAGCTTGTTTCTGACACCCTTTACTTCTCAGTTTCATATGTCGACAGATACTTGTCTTTGACTGCCTTGACAAGTCAAAAGCTGCAGCTGCTTGGTGTTTCTGCAATGCTCATTGCATCAAAATATGAGGAGATAAAGCCACCTGAAGTGGAAGAATTTTGCTACATTACAGACAACACATACACCAAGGATCAGGTTGTGGAGATGGAAGCTGATATATTGAAGTCTTTGAAGTTCGAATTGGGTGGTCCAACGGTAAAGACCTTCCTAAGATTCTCCAAAGTTGCTCAAGAAAGTAAAGATACTACAGACTTGCAATTTGAGTTTCTCACTAGCTACCTCGCTGAGCTCAGTTTGTTGGATTATAATTGTGTAAAATTCTTGCCTTCTTTGGTGGCGGCATCTGTTGTATTTCTAGCAAGATTTATGCTAAGCCCAAAGACACATCCTTGGAATGCAGCACTTCATCAACTTACCAGATATAAACCTGCCGAATTGAGGGAATGTGCTCAAAATATACATGATTTGTACCTCAGTAGAAGAGGTGGCTCTTTGCAAGCTGTGAGAGAGAAATACAAACAACATAAGTTCAAATGCGTGGCTACAACTCCGTCACCTCCTGAGATACCCCTTTCCTATTTTGAATTTAGAGGGGCATATCCATAG	1161	0.4513	MAHQENPTRPQREAKKRAAAALSELQSKKKRVVLAELTNVNNSSVAPPQPQQPAKPVPGDIRFNQNVEKIKTTTTRGKKRTVGKKQKPATTPPEIVVDATKKSEVTVDPQLCAPYASDIYDYLRQLEVDPSKRPLPDYVQKVQRHVNANMRGVLVDWLVEVAEEYKLVSDTLYFSVSYVDRYLSLTALTSQKLQLLGVSAMLIASKYEEIKPPEVEEFCYITDNTYTKDQVVEMEADILKSLKFELGGPTVKTFLRFSKVAQESKDTTDLQFEFLTSYLAELSLLDYNCVKFLPSLVAASVVFLARFMLSPKTHPWNAALHQLTRYKPAELRECAQNIHDLYLSRRGGSLQAVREKYKQHKFKCVATTPSPPEIPLSYFEFRGAYP	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121766g00001	386	FunFam	Mitotic cyclin 6	134	234	-	-
	Stsc121766g00001	386	SUPERFAMILY	Cyclin-like	108	246	IPR036915	-
	Stsc121766g00001	386	Gene3D	-	118	367	-	-
	Stsc121766g00001	386	MobiDBLite	consensus disorder prediction	39	91	-	-
	Stsc121766g00001	386	MobiDBLite	consensus disorder prediction	1	21	-	-
	Stsc121766g00001	386	ProSitePatterns	Cyclins signature.	151	182	IPR006671	-
	Stsc121766g00001	386	PANTHER	CYCLINS	73	365	IPR039361	-
	Stsc121766g00001	386	FunFam	Cyclin A1	236	367	-	-
	Stsc121766g00001	386	Coils	Coil	11	31	-	-
	Stsc121766g00001	386	PIRSF	Cyclin_A_B_D_E	1	377	IPR046965	GO:0016538\|GO:0044772
	Stsc121766g00001	386	SMART	cyclin_7	156	240	IPR013763	-
	Stsc121766g00001	386	SMART	cyclin_7	252	340	IPR013763	-
	Stsc121766g00001	386	Pfam	Cyclin, N-terminal domain	118	246	IPR006671	-
	Stsc121766g00001	386	CDD	CYCLIN_AtCycA-like_rpt2	249	362	-	-
	Stsc121766g00001	386	Gene3D	-	134	247	-	-
	Stsc121766g00001	386	SMART	Cyclin_C_2	249	371	IPR004367	-
	Stsc121766g00001	386	Pfam	Cyclin, C-terminal domain	249	370	IPR004367	-
	Stsc121766g00001	386	SUPERFAMILY	Cyclin-like	249	373	IPR036915	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121766g00001	Stsc-Chr121766	2254	5092	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121766g00001	1	380	Core Cell Cycle Gene Families	AT1G47230	57.292	8.91e-149	424

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121766g00001	K06627		-	gmx:100801988	518.85