Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121756g00005 ATGAGCATAAAAAAGGGGTGTTATGAAGAAGAAGAAGAAGATGAGATGGTGGTGATTGGCAAAGTGGTGGTTGTTGCAGTTAGAGCTTCAAGAGAAATTTCAAGAACTGCTTTGGTTTGGGCATTGACTCATGTTGTTCAACCAGGGGATTCCATTAAGCTCTTAGTTCTCATTCCTCTTCTCTCCTCCTCCAAGAGGAATTGGGGATTCTCAAGATTCACCACTGATTGTACCACTAGTAACTGGAGATCCCACTTAGGAACTGCTTCAGATCAGAGAGAGATTATTACAAGTTCCTGTTCCCAATTGGTGCTTCAACTCCATGATTTATATGATCCAGACAAGATTAAGATCAGAGTTAAGATTCTGTCTAGTTCTTTATGTGGAGCAGTTGCCATTGAAGCCAAGAGAGTCCACTCAAGCTGGGTTATATTGGACAAAAAATTGAAACAAGAAAAGAAATGCTGCATGGAGCAGCTGCATTGCAATATAGTAAGTATGAAAAGATCAAGGGCAAAGATTCTACGCTTGAATTTGAACAGTTCACCTAAGATGGAACTCAATGATGGGGGATTTTCATTGTCATTGGAGCTGAATGGAATCAATGCATATGCAAAACAAAATCCAGACACAATTAGAGGTCCTGCTGTTACTCCTGCTAGTAGTCCTGAGCAAGGATCACCACTGTTGACTGCAACTGATATTGGAACCTCATCACTCTCAAGCTCAGATCCTAGCTCTTCACCATTTTTCCACTATGAAAGACGAAGGCGGGGTTTTCCTTTTGTTCATGAGGGGCTGAAAAGTCTGGAGGATATTGAATCTGACTCAGAGAGTGAAAAGCTAAGTTTATCTTCAAAAAGTTCATATTTTCAGCCCTGGATTGGCAATGTGATTTGTATTGATGGTGAGGAGAGTATGCAAAGATTCAGTGATAAGGAGTTGGTTTGTGGCTATGAATCTGTGCTTCAGAAACTCTCTAAGTTCGATCAAGACCCCGTCTTAGGAGTGCTTAATTGCAAGAATGATGTCAACCTAAGCAAAAGTGTTCGAGAGGCAGTTTCGCTTGCGAGGAATGCACCTCCTGGTCCTCCTCCATTGTGCTCAATTTGTCAGCACAAGGCACCTGCATTTGGAAATCCTCCAAGGTGGTTTACATTTGCTGAATTGCAAGTTGCCACAGGTGGCTTTTCACAAGCAAATTTCTTGGCAGAAGGTGGTTTTGGTTCCGTGCACCGTGGCGTGCTACCTGATGGACAAGTCATTGCTGTGAAGCAGTATAAAGTAGCCAGTTCACAAGGTGATAAAGAGTTCTGCTCAGAAGTTGAAGTGTTAAGCTGCGCACAACACCGGAATGTCGTGATGCTAATCGGGTTTTGTGTGGAGGATGGAAGAAGATTACTTGTTTATGAATACATATGCAATGGCTCATTGGATTCTCATCTTTATGGACGAAAAGAGAAGGTACTAGAATGGTGTGCAAGGCAAAAAATTGCAGTAGGAGCTGCTCGAGGTTTAAGGTACCTGCATGAAGAATGCAGAGTGGGGTGTATTGTGCACCGTGACATGAGACCTAACAATATCCTCCTTACCCATGATTTTGAAGCACAGGTGGGAGATTTTGGACTTGCAAGGTGGCAACCTGATGGAGATTTGGGTGTGGAAACCAGGGTCATAGGAACATTTGGGTATTTGGCGCCAGAATATGCAGAGAGTGGGCAAATAACTGAGAAAGCAGATGTATATTCGTTTGGAATAGTGTTATTGGAGCTTGTTACAGGAAGGAAAGCTATTGATATAAACCGACCCAGAGGGCAGCAATGCCTCAGTGAATGGGCACGGCCATTGCTTGAAGAAGAAGAAGGGAGAGAAGAGCTAGTTGATCCAAGCATAAGGAAAGGGTATATTCACATTCATAAAGAGGTAAATAGAATGTTGGAATGCTGCTCCATGTGCATCAGAAGAGACCCTCATTCAAGGCCTCGAATGTCTCAGGTCCTAAGGATGTTGGAACCTCACATTCTCATCTGA 2031 0.4298 MSIKKGCYEEEEEDEMVVIGKVVVVAVRASREISRTALVWALTHVVQPGDSIKLLVLIPLLSSSKRNWGFSRFTTDCTTSNWRSHLGTASDQREIITSSCSQLVLQLHDLYDPDKIKIRVKILSSSLCGAVAIEAKRVHSSWVILDKKLKQEKKCCMEQLHCNIVSMKRSRAKILRLNLNSSPKMELNDGGFSLSLELNGINAYAKQNPDTIRGPAVTPASSPEQGSPLLTATDIGTSSLSSSDPSSSPFFHYERRRRGFPFVHEGLKSLEDIESDSESEKLSLSSKSSYFQPWIGNVICIDGEESMQRFSDKELVCGYESVLQKLSKFDQDPVLGVLNCKNDVNLSKSVREAVSLARNAPPGPPPLCSICQHKAPAFGNPPRWFTFAELQVATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQYKVASSQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRKEKVLEWCARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEAQVGDFGLARWQPDGDLGVETRVIGTFGYLAPEYAESGQITEKADVYSFGIVLLELVTGRKAIDINRPRGQQCLSEWARPLLEEEEGREELVDPSIRKGYIHIHKEVNRMLECCSMCIRRDPHSRPRMSQVLRMLEPHILI 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121756g00005 676 ProSiteProfiles Protein kinase domain profile. 397 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121756g00005 676 PANTHER OS01G0750732 PROTEIN 348 671 - -
Stsc121756g00005 676 Pfam Protein kinase domain 401 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121756g00005 676 MobiDBLite consensus disorder prediction 214 247 - -
Stsc121756g00005 676 ProSitePatterns Tyrosine protein kinases specific active-site signature. 518 530 IPR008266 GO:0004672|GO:0006468
Stsc121756g00005 676 CDD STKc_IRAK 403 672 - -
Stsc121756g00005 676 MobiDBLite consensus disorder prediction 209 247 - -
Stsc121756g00005 676 SUPERFAMILY Protein kinase-like (PK-like) 378 671 IPR011009 -
Stsc121756g00005 676 Gene3D Transferase(Phosphotransferase) domain 1 473 674 - -
Stsc121756g00005 676 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 369 472 - -
Stsc121756g00005 676 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 473 676 - -
Stsc121756g00005 676 Gene3D Phosphorylase Kinase; domain 1 369 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121756g00005 Stsc-Chr121756 17395 20402 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121756g00005 356 666 Trihelix Transcription Factor Family AT1G68690 50.318 1.68e-100 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc121756g00005 Pkinase 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121756g00005 - - aprc:113855006 1043.11