Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121756g00004 ATGGGAAGGAAGTGCTCTCATTGCGGCAACATTGGCCACAATTCAAGAACCTGCACCACTTCTTCTTCTTCTTCTTCTTCAGGAATCCGTCTCTTCGGGACCCACCTTCTTGCAGAGCCTTCTTCTTCTTGTTCCTCCATGAACAAGAAATGCTTTAGCATGGACTCATTAACATTATTCCCCACTACTTCTTCTTCTTCTATTGGTTATGTATCAGATAACAATGGAGCTCCACCTCAAGACAGGAAGAAAGGGTTAACATGGACAGAGGAGGAGCACAGAAGATTCTTGATTGGGCTTGAGAAGCTGGGAAAGGGGGATTGGAGGGGCATTTCTAGAAGCTTCGTAAGAACAAGAACCCCCACCCAAGTAGCCAGCCATGCTCAGAAGCATTTCCTCCGCCTTGCTAACAATAACAAACGCCCTCCACCAACAACATCAACATCCAAGTCTACAATAATGCCGCACTTTCTTCATGAAACTAGTACTACTACTACTACTTCTGAATCATCATCATCCTCATCCTCTATGCATGAGGAACTACCCATGTGCCTACACACACACCACATCATCAAATCTTCAAATAATACTAGTGTTGTGCCACCGCCTGATCTGAGCCTCACTCTTGCACCACCGCCCCCCTCCGCCACCTAA 654 0.4633 MGRKCSHCGNIGHNSRTCTTSSSSSSSGIRLFGTHLLAEPSSSCSSMNKKCFSMDSLTLFPTTSSSSIGYVSDNNGAPPQDRKKGLTWTEEEHRRFLIGLEKLGKGDWRGISRSFVRTRTPTQVASHAQKHFLRLANNNKRPPPTTSTSKSTIMPHFLHETSTTTTTSESSSSSSSMHEELPMCLHTHHIIKSSNNTSVVPPPDLSLTLAPPPPSAT 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121756g00004 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 136 IPR017930 -
Stsc121756g00004 217 Gene3D - 86 137 - -
Stsc121756g00004 217 SUPERFAMILY Homeodomain-like 82 136 IPR009057 -
Stsc121756g00004 217 MobiDBLite consensus disorder prediction 136 179 - -
Stsc121756g00004 217 PANTHER TRANSCRIPTION FACTOR KUA1 3 149 - -
Stsc121756g00004 217 CDD SANT 87 132 IPR001005 -
Stsc121756g00004 217 Pfam Myb-like DNA-binding domain 87 131 IPR001005 -
Stsc121756g00004 217 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Stsc121756g00004 217 MobiDBLite consensus disorder prediction 139 179 - -
Stsc121756g00004 217 FunFam transcription factor MYB1R1 86 137 - -
Stsc121756g00004 217 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
Stsc121756g00004 217 NCBIfam myb-like DNA-binding domain, SHAQKYF class 83 134 IPR006447 GO:0003677
Stsc121756g00004 217 SMART sant 84 134 IPR001005 -
Stsc121756g00004 217 MobiDBLite consensus disorder prediction 194 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121756g00004 Stsc-Chr121756 12145 13326 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc121756g00004 Myb_DNA-binding 3.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121756g00004 - - adu:107479628 197.593