Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121747g00003 ATGCAAGATAATATGAAGAGGCAGAAGCAGAAGCAGGTGGTGGTGGTCAATGATACTGAAGAATCTAATAAGAAGAAGGAGCATCGCATTGTGGTGTGGACTCAAGAGGAGGATGATATTTTGAGGGAGCAGGTTGGAATCCATGGAACTGAAAATTGGGGTGTTATTGCTTCTAAATTCAAGGATAAAACTACAAGACAGTGCAGAAGGAGATGGTTCACATACTTGAATTCTGATTTCAAGAAAGGGGGTTGGTCACCAGAGGAAGATATGCTCTTGTGCGAGGCTCAAAAACTATTTGGTAACCGATGGACAGAAATATCGAAGGTGGTTCCAGGCAGAACGGATAATGCTGTTAAGAACCGATTCTCCACATTGCGAAAAAAGAGAGCAAAATATGAAGCATTAGCAAAAGAGAACAACACTTCTTACACCAATTCAAATAACAAGAGGGTTATTCTACAACATGGATATGTTACAGATTCAGCATCAGAATCTAGTGTGCCTACTAAGAAGATGAGGAGGTCACATATCCCAGAGGTAGCAGAAAGGATAAACTATGGAGACAGATCACATAAACAAAACGGAGTTCCAATAAGTCAGCAGCCAAGAGCGCCATTCGCCGTGTTACCGCAGAACTCGCATAATGTCAACAACTTGCCAGACCAGCATGACATCTGCAGTATGAAGTTTAATGGCCAGAACAAGTTGCAAGGGACCTTCCTCAAAAAGGATGATCCAAAGATAAATGCATTGATGCAACAAGCAGAGTTGCTAAGTTCATTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTAGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAAACGAACGAAAGAGTCTGATGTTCTGAGATGTAAGGTTCCGGATCTACAGCTTGTAGATCTAGGAGATTGGTTGGAGGACTTGAAGAGTAACAGTGAGGGAATTCAACCGTGTTGGAGGAAATTTAAATCCATTCAAAACACAAAATTCTATGAGGACTATAGTTTCGGATTGTATTCGAGGCAAATGGAGTTATATGAAGACTCTCCTGGCAGTTCTGAATACAGCACAGGATCAACTCTTCTGCCTCATTTGGGTGCTGACAACTCGGAACACTCGTTACATCAGGAAATTGGAACTGAACTCAAGTCAATACACATTGAAGATCAAAAGGGATGTGAGCAAGGTGTTATTTCTAATGCAACTTTGGATCAAGATATATTCGCATTTAATAAGGATCGGATGAACAAGGATGGCATTGTTGCTGGCTCATCAATGACAGAGTTCAGTTCTCCTCTTCAAGTTACACCTATGTTCAGATCCTTGGCAGCAGGAATTCCTAGCCCTCAGTTTTCAGAAAGTGAGAGGAACTTCCTCATGAAAACTCTTGGAATGGAATCTCCATCTCTCAACACAAGCGCGAACCCCTCGCAACCACCACTCTGCAAAAGAGCCCTGCTACAAAGTCTATAA 1491 0.4178 MQDNMKRQKQKQVVVVNDTEESNKKKEHRIVVWTQEEDDILREQVGIHGTENWGVIASKFKDKTTRQCRRRWFTYLNSDFKKGGWSPEEDMLLCEAQKLFGNRWTEISKVVPGRTDNAVKNRFSTLRKKRAKYEALAKENNTSYTNSNNKRVILQHGYVTDSASESSVPTKKMRRSHIPEVAERINYGDRSHKQNGVPISQQPRAPFAVLPQNSHNVNNLPDQHDICSMKFNGQNKLQGTFLKKDDPKINALMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLKRTKESDVLRCKVPDLQLVDLGDWLEDLKSNSEGIQPCWRKFKSIQNTKFYEDYSFGLYSRQMELYEDSPGSSEYSTGSTLLPHLGADNSEHSLHQEIGTELKSIHIEDQKGCEQGVISNATLDQDIFAFNKDRMNKDGIVAGSSMTEFSSPLQVTPMFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNTSANPSQPPLCKRALLQSL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121747g00003 496 CDD SANT 33 76 IPR001005 -
Stsc121747g00003 496 ProSiteProfiles Myb-like domain profile. 33 76 IPR001005 -
Stsc121747g00003 496 Gene3D - 84 154 - -
Stsc121747g00003 496 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Stsc121747g00003 496 SMART sant 29 78 IPR001005 -
Stsc121747g00003 496 SMART sant 81 129 IPR001005 -
Stsc121747g00003 496 FunFam Transcription factor MYB124 25 81 - -
Stsc121747g00003 496 Pfam Myb-like DNA-binding domain 33 93 - -
Stsc121747g00003 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Stsc121747g00003 496 MobiDBLite consensus disorder prediction 1 21 - -
Stsc121747g00003 496 Gene3D - 20 81 - -
Stsc121747g00003 496 CDD SANT 85 126 IPR001005 -
Stsc121747g00003 496 PANTHER MYB PROTEIN-RELATED 33 161 - -
Stsc121747g00003 496 SUPERFAMILY Homeodomain-like 31 123 IPR009057 -
Stsc121747g00003 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 76 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121747g00003 Stsc-Chr121747 16637 22211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121747g00003 21 326 MYB Transcription Factor Family AT2G02820 59.936 2.18e-126 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121747g00003 Myb_DNA-bind_6 4.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121747g00003 K09422 - gmx:100807667 712.22