Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121741g00004 ATGGCTGCTAAGACCAACAACTATGATGAGGTGAAGATCATAGAAGAGTCTGAAGTTGCTCCACCACAAGGATCTCTTCCTTCAACCACACTCCCCTTCACTTTCTTCGACATTCCATGGTTCTTATGCCACCCCGTCAAGCGCATCTTCTTCTATGACTTCCCATACTCCACCAACCACTTCCTTCAATCATCACTCCCTCCTCTCAAACACTCTCTTTCCCTCACTCTTCAACACTTCTTTCCTTTCGCCTCCAAACTCATCGTTCCTCCACAACCCCAACAACCTTTCATGCGCTATCACCAAGGAAGCGACTCGGTTAATTTCACGGTTGCGGAGTCCAAAGCTGATTTCAACGTTCTTGTATCTGATTCACCACAAGATGCTAGAGATTGGCACCCTTTGATTCCTTCTTTGCCCCCAGAAGTTACCTTAGAGAATGGCACTCGTGTGATTCCTCTTATGGCGATTCAACTCACTATCATACCCAATTCTGGATTCTCTATTTCTCTCACTTTCAACCACCTTGTTGCAGATGGCAAGTCTCTTCATCATTTCATCAAGTTTTGGGCCAAACTTTGCAAGGACATAGTAACAAAAGGAGGTAATAACTTAGGGTCCTTTGTTGTTGAAGGGTCTAATGGTAATTTACCCCTACCTTCTCATGATAGAGGCAAAGTTAAGGACCCAAATGGGCTTATGCAAGTTTACTTGGAAGAGCTCAGAAATTCTGATTTTCAGAGCATGGAATTTCGAGGGCTTGTCAAAGATGTTTCTACCGACAAGGCACGTGGCACGCTCGTGGTGACACGTGACCAAGTTGAGAAATTAAAAAAATGGGTCTCCCTTAAATTTAGTGACACCTATGGTAACCCTGATGAGTCATTATTGCAACACATTTCAACTTTTGTTGTCACAACCTCTTTGGTTTGGGTTAGTATGATTGAATCAGAAGAACAATTCAATAATAATAATAATAAAAATGTTAATAAGGAGGATCACTATGAAGAAGTTTGCCATTTGGTGTTTCTAGCTGATTGCCGTGGCCAAGTTGAATTTTGTGTCCCTCCAAATTACTTTGGAAATTGTCTAGAGCCTGCGTTTGTGACACTAAAAAGGGGTGACATATTAGGAGAAAACAATGGGATTGTTAAGGTGGCAAGTGCAATTGAGAGTGAAATTAGAGAGATGAAAAGAGAAGCACTTAGAGATGGTGAAAATATGATGAGAAGGTATAAGGAATTAGCTATGTGTGGTGAAAGTTTGATTGTGGTTGCAGGGTCACCAAAATTGGGAGTGTATGAAACTGAATTTGGGTGGGGAAAGCCTAGAAAATCTGATGCGGCACATCTTGAATCATCAGGCTCAATTTCTCTTTCTGATAGTAAGAATAAAGAAGGAGCAATTGAAGTTGGATTTTCACTTGAATGGTCTAGAATGAATCTATTCATCAACATCTTTGAACAACACATCAGAAGTGTTGATCATAGTTTGTCCATGATGACCAATTTGAATTGA 1518 0.4091 MAAKTNNYDEVKIIEESEVAPPQGSLPSTTLPFTFFDIPWFLCHPVKRIFFYDFPYSTNHFLQSSLPPLKHSLSLTLQHFFPFASKLIVPPQPQQPFMRYHQGSDSVNFTVAESKADFNVLVSDSPQDARDWHPLIPSLPPEVTLENGTRVIPLMAIQLTIIPNSGFSISLTFNHLVADGKSLHHFIKFWAKLCKDIVTKGGNNLGSFVVEGSNGNLPLPSHDRGKVKDPNGLMQVYLEELRNSDFQSMEFRGLVKDVSTDKARGTLVVTRDQVEKLKKWVSLKFSDTYGNPDESLLQHISTFVVTTSLVWVSMIESEEQFNNNNNKNVNKEDHYEEVCHLVFLADCRGQVEFCVPPNYFGNCLEPAFVTLKRGDILGENNGIVKVASAIESEIREMKREALRDGENMMRRYKELAMCGESLIVVAGSPKLGVYETEFGWGKPRKSDAAHLESSGSISLSDSKNKEGAIEVGFSLEWSRMNLFINIFEQHIRSVDHSLSMMTNLN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121741g00004 505 PANTHER - 11 492 - -
Stsc121741g00004 505 Pfam Transferase family 15 488 - -
Stsc121741g00004 505 Gene3D - 10 252 IPR023213 -
Stsc121741g00004 505 Gene3D - 259 494 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121741g00004 Stsc-Chr121741 15160 17168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121741g00004 49 483 Monolignol Biosynthesis Gene Families AT5G48930 22.075 2.75e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121741g00004 - - ahf:112707065 631.328