Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121741g00001 ATGTTAATCTCTCACCGTTACAAACCTCTTCTCTATCAAACCCTAAATCTTGTATTCCGAAGAACACCACAACTCATGTTCTGCACTTCACAATCACACTCACACTCTTCCACTGTTTCATACCTCATCAATAATCTTGGTTTCACCCCACAAGCTGCACTAACTCTAGCCACCGCAAAATGGTTTCGTTTCAGTACCCCACAAAAGGCAGACGCAGTCCTCGCATTCTTCAAGACCCATGGATTCTCCCATTCCCAAATTGCTACCATTGTTTCCAAGCTACCTGCAATACTTTCATCCAATCCACAAATCATCCTACCAAAGTTTCAATTTTTAGCCTCCAAAGGTGCTTCCACCCATGACATTGTTCTAGTAGCAACTAGGTATCCTAGATTCTTGCGTTTGAGCCTCCAGAACCACATAATCCCTACATATGGATTGATGAAAACATTCTTTCCATCCGATGAGAAAACACTTAGCTGCATTCTTGCTTACCCTGGTTCGTTCGTGGACTATCGCTTTCTGAAAAATACCAAGTTGTTGGCTGATGCCGGAGTCTCTAACTCTGTTATCCGCCATTTGATTTGTGTCAGTACCCGTGTGCTCATGTCTTCTGACTTGAGGAAGTGTGTGGATGAAGTAAAGAAATTAGGGATTGATCCTTCAAAGGTTAAGTTTGCTGTAGCTTTGATAGCCAAAAAGACTGTAAAGAAATCACTTTGGGATGCCAAAGTTGATGTCTTGAAGAGCTGGGGTTGGTCTAAAGAAATTATTTCCAAAGCATTCAGGAGTAACCCTTATTATATGCTAACATCTAAGGATAAGATTAATGAGGTGATGAAATTTTGGGTCAATCAATTAGGTTGGGACCCTTTGGCCCTTGCCAAGATTCCATTTCTTTTTGGATATAGTTTGGAGAGAAGAATCATTCCGAGGGCTTTTGTTCTCCAGTATTTACTTGCAAAAGGTTTGAGAAACAAGAATAATGATTTATCTAAGCCGTTTTTTATTTCGGAAGAGGCCTTCATTAAGAAGTTTGTGGAATGTTTCACAGAGGAAAGGTCTCAACTGCTGAAGATATACTATGAGAAAAAAGGATGTTCATGA 1107 0.4029 MLISHRYKPLLYQTLNLVFRRTPQLMFCTSQSHSHSSTVSYLINNLGFTPQAALTLATAKWFRFSTPQKADAVLAFFKTHGFSHSQIATIVSKLPAILSSNPQIILPKFQFLASKGASTHDIVLVATRYPRFLRLSLQNHIIPTYGLMKTFFPSDEKTLSCILAYPGSFVDYRFLKNTKLLADAGVSNSVIRHLICVSTRVLMSSDLRKCVDEVKKLGIDPSKVKFAVALIAKKTVKKSLWDAKVDVLKSWGWSKEIISKAFRSNPYYMLTSKDKINEVMKFWVNQLGWDPLALAKIPFLFGYSLERRIIPRAFVLQYLLAKGLRNKNNDLSKPFFISEEAFIKKFVECFTEERSQLLKIYYEKKGCS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121741g00001 368 PANTHER CGI-12 PROTEIN-RELATED 33 350 IPR003690 GO:0003690|GO:0006355
Stsc121741g00001 368 SMART mt_12 88 118 IPR003690 GO:0003690|GO:0006355
Stsc121741g00001 368 SMART mt_12 16 49 IPR003690 GO:0003690|GO:0006355
Stsc121741g00001 368 SMART mt_12 192 220 IPR003690 GO:0003690|GO:0006355
Stsc121741g00001 368 SMART mt_12 123 153 IPR003690 GO:0003690|GO:0006355
Stsc121741g00001 368 SMART mt_12 259 290 IPR003690 GO:0003690|GO:0006355
Stsc121741g00001 368 SMART mt_12 291 325 IPR003690 GO:0003690|GO:0006355
Stsc121741g00001 368 Pfam mTERF 245 342 IPR003690 GO:0003690|GO:0006355
Stsc121741g00001 368 Pfam mTERF 74 278 IPR003690 GO:0003690|GO:0006355
Stsc121741g00001 368 Gene3D Transcription termination factor 3, mitochondrial 170 360 IPR038538 -
Stsc121741g00001 368 Gene3D Transcription termination factor 3, mitochondrial 52 169 IPR038538 -
Stsc121741g00001 368 FunFam Mitochondrial transcription termination factor-like 137 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121741g00001 Stsc-Chr121741 3304 4410 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc121741g00001 mTERF 4.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121741g00001 K15031 - gmx:102666739 330.487