Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121734g00002 ATGGGGTGTGTGTTTGGGAGACAGTCATCACAAAAGTCCAGTGCGGCGGAAGAAGCGGCGGCGGCGGAGGGGAGAGAGAGGAGGAGGGATGAGAGGAGAGAGGAAGTGAGGGAAGCAAAAGCAGAAGTGGTTGTTGAGACTCAGAATGGTGGTGGTGGTGAAGAGAAGAGAAGTTCAAGGCAAAGAGGTGAGAGGAGAAGATCTTCAAAACCAAATCCAAGATTGAGTAATCCACCAAACAATGTTCATGGTGAGCAGGTGGCAGCAGGGTGGCCCTCTTGGCTTTCCAAGGTTGCTGGTGAAGCCATCAATGGATTGACCCCTAGGAGAGCTGACACTTTTGAGAAGCTTGATAAGATTGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATACTTTAACAGGGAAAATTGTTGCCCTAAAGAAAGTCCGGTTCGACAATTTGGAGCCTGAGAGTGTGAAATTCATGGCTAGGGAGATTCTGATTCTGCGTCGCCTGGATCATCCCAATGTCGTGAAATTGGAAGGTTTAGTGACTTCTAGAATGTCATGTAGCTTATATCTTGTGTTCGAATACATGGTGCATGATTTGGCTGGACTCGCAACAAATCCAGCAATTAAGTTCACAGAGCCTCAGGTTAAATGTTACATGCATCAACTATTTTCGGGGCTGGAACATTGTCACAACCGCCATGTGCTGCATCGTGATATAAAGGGATCAAACCTTCTTATTGACAATGATGGAGTTCTTAAAATCGCTGATTTTGGATTAGCATCGTTCTTTGATCCAAATCACAAGCATCCTATGACCAGTAGAGTGGTGACCTTATGGTATCGTCCTCCCGAACTTCTTCTCGGGGCCACCGAATATGGTGTGGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCCGGAAAGCCAATTATGCCTGGTCGAACAGAGGTGGAACAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGATGAATATTGGAAAAAATCAAAGTTGCCACACGCAACGATTTTTAAACCCCAACAGTCATACAAGCGGTGCATAGCAGATACTTTTAAAGATTTTCCACCGTCATCCCTTCCACTTATTGAGACCCTTCTTGCAATCGATCCAGCAGAGCGACTGACTGCCACTGCTGCATTGCATAGTGAATTCTTTACAACAAAACCTTATGCTTGCGATCCCTCAAGTCTTCCAAAATATCCTCCCAGCAAGGAGATGGACGCAAAACTACGTGATGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAAAGCTAACGCTGATGGTGTCAAGAAATCCCGACCACGTGATAGAATCGGCAGGGGAATTCCAGTTCCAGAGGCTAATGCTGAATTGCAAGCAAATATTGATAGACGGAGACAGATAACACATGCGAACGCTAAGAGCAAGAGTGAGAAGTTTCCCCCTCCCCACCAAGATGGAACTCTTGGCTATCCTTTGGGTTCTTCACACCACATGGATCCGGCATTTGATCCTCCCGAAGTTCCGTTTAGTTCCACAAACTTCTCACAACCAAAATCAAGTATGCAAACATGGTCCGGCCCCTTGGTAGAATCTGCCGGTGCCGGCGCACCAAGAAGAAAGAAGAAACACGGTAGGTAA 1659 0.4635 MGCVFGRQSSQKSSAAEEAAAAEGRERRRDERREEVREAKAEVVVETQNGGGGEEKRSSRQRGERRRSSKPNPRLSNPPNNVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPQQSYKRCIADTFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGVKKSRPRDRIGRGIPVPEANAELQANIDRRRQITHANAKSKSEKFPPPHQDGTLGYPLGSSHHMDPAFDPPEVPFSSTNFSQPKSSMQTWSGPLVESAGAGAPRRKKKHGR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121734g00002 552 SUPERFAMILY Protein kinase-like (PK-like) 109 404 IPR011009 -
Stsc121734g00002 552 MobiDBLite consensus disorder prediction 465 487 - -
Stsc121734g00002 552 Gene3D Transferase(Phosphotransferase) domain 1 197 437 - -
Stsc121734g00002 552 MobiDBLite consensus disorder prediction 19 42 - -
Stsc121734g00002 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Stsc121734g00002 552 SMART serkin_6 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121734g00002 552 PANTHER CELL DIVISION PROTEIN KINASE 112 402 - -
Stsc121734g00002 552 MobiDBLite consensus disorder prediction 1 86 - -
Stsc121734g00002 552 MobiDBLite consensus disorder prediction 433 453 - -
Stsc121734g00002 552 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Stsc121734g00002 552 FunFam probable serine/threonine-protein kinase At1g54610 197 438 - -
Stsc121734g00002 552 ProSiteProfiles Protein kinase domain profile. 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121734g00002 552 MobiDBLite consensus disorder prediction 1 16 - -
Stsc121734g00002 552 Coils Coil 22 42 - -
Stsc121734g00002 552 MobiDBLite consensus disorder prediction 515 534 - -
Stsc121734g00002 552 MobiDBLite consensus disorder prediction 53 71 - -
Stsc121734g00002 552 CDD STKc_CDK9_like 114 398 - -
Stsc121734g00002 552 Pfam Protein kinase domain 114 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121734g00002 552 FunFam probable serine/threonine-protein kinase At1g54610 101 196 - -
Stsc121734g00002 552 MobiDBLite consensus disorder prediction 433 552 - -
Stsc121734g00002 552 Gene3D Phosphorylase Kinase; domain 1 102 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121734g00002 Stsc-Chr121734 10732 14892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121734g00002 109 436 Core Cell Cycle Gene Families AT5G10270 51.744 1.97e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc121734g00002 Pkinase 2.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121734g00002 K08819 - gmx:100779413 968.378