Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121733g00001 ATGACACAAAGAAACTTGGAGAACCTTGAAGATCAGATAGATGGTTTACGTGGAAAGTTTAATAAAGACAGCTCCATGAGCAACACACCCCACAGGCCCACAGTTATTTTAGCTTTCAACAACGCAAGAGGAAAGAAGAAGCACTTAAAGAGGCTAGCTGAAGGCTCCAAAGCACTGGATGCTTGCCAAGCTCCGAAGGCTAGGGCAGGACCACACAGATTAAGGGAGTGTATACCACTGATCTTGATTCTAAGGAACAAGCTCAGGTATGCACTTGCATACCGCGAAGTCATTTCCATCCTCATGATGCGCCATGTTTTGGTCGATTCTAAAGTTAGAACTGATCAGAAATACCCTACAGGATTCATGGATGTTGTATCTATTCCTAAAACAAACGAGAACTTCAGACTCCTATATGATACCAAGGGCCGTTTTCGCCTGCGCACAATAGGGGAGCATGAAGCAAGGTTCAAGCTATGCAAGGTGCGATCAGTGCAATTAGGCAAAAGGGGCATACCATATCTGAACACATACGATGGAAGAACAATTAGATACCCTGACCCATTAATCAAAGCCAATGACACCATAAAGTTTGACTTGGAGAGTTACAAGATCACAGATTTCATAAAATTCGAAGTTGGGAACGTTGTGATGGTGACTGGTGGAAGGAACAGAGGGAGGGTTGGGATATTGAAGAAAAGGGAAAGGCATATGGGAACATATGACACAATCTATGTTCAAGATGCTGTTGGTAACGAGTTTGCAACAAGGTTGGAGAATGTTTTTATTATTGGGAAAGGACCAAAACCTTGGGTGTCTTTGCCAAAAGACAGAGGTATTAAGCTGAGTATTATTGAAGAGGCTAGGTTGAGGCGTCAGAAAGAAATGGCTGCTGCCAGAGCATGA 906 0.4327 MTQRNLENLEDQIDGLRGKFNKDSSMSNTPHRPTVILAFNNARGKKKHLKRLAEGSKALDACQAPKARAGPHRLRECIPLILILRNKLRYALAYREVISILMMRHVLVDSKVRTDQKYPTGFMDVVSIPKTNENFRLLYDTKGRFRLRTIGEHEARFKLCKVRSVQLGKRGIPYLNTYDGRTIRYPDPLIKANDTIKFDLESYKITDFIKFEVGNVVMVTGGRNRGRVGILKKRERHMGTYDTIYVQDAVGNEFATRLENVFIIGKGPKPWVSLPKDRGIKLSIIEEARLRRQKEMAAARA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121733g00001 301 Gene3D - 41 153 IPR036986 GO:0003723
Stsc121733g00001 301 Hamap 30S ribosomal protein S4e [rps4e]. 47 274 IPR000876 GO:0003735|GO:0005840|GO:0006412
Stsc121733g00001 301 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 43 289 IPR000876 GO:0003735|GO:0005840|GO:0006412
Stsc121733g00001 301 FunFam 40S ribosomal protein S4 211 281 - -
Stsc121733g00001 301 Pfam Ribosomal family S4e 131 205 IPR013845 -
Stsc121733g00001 301 Gene3D - 211 281 IPR014722 -
Stsc121733g00001 301 Gene3D - 158 208 IPR038237 -
Stsc121733g00001 301 Pfam 40S ribosomal protein S4 C-terminus 248 294 IPR032277 -
Stsc121733g00001 301 CDD KOW_RPS4 211 265 IPR041982 -
Stsc121733g00001 301 FunFam 40S ribosomal protein S4 41 153 - -
Stsc121733g00001 301 Pfam KOW motif 213 246 IPR005824 -
Stsc121733g00001 301 SMART kow_9 210 237 IPR005824 -
Stsc121733g00001 301 FunFam 40S ribosomal protein S4 158 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121733g00001 Stsc-Chr121733 8309 11592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121733g00001 42 298 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 71.648 5.64e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121733g00001 K02987 - msin:131230752 398.282