Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121726g00003 ATGGCGGTTACAATATTCCTAACAACATCCAATGTTGTTCTTTGTGATGATAATACGCCAATTCCAGCTGACAAGGGTCAACTGGATGGATGGTTCAACCAAAACGTTGGTCCATTAGATCAGAGGAAGAGCAGTCTTGATCCTTCGCTTGTGGCGGCCGAGGAAGGTTCTAAAGTCGTTAAGGTAATGCAAGACGGTAGCGGTGATTTCAAGAGCATCACGGATGCCGTCAACAGCATCCCTTCCGGGAACGCCAAGCGTGTGATCATATACATAGGTGCTGGGAAATACAATGAAAAGATCAGGATTGAAAGGACCAAGAATTTTGTCACCTTTTATGGTGCACCAGGAGGGGAGATTCCAACCTTGGTCTATGGTGGCACTGCACAACAATATGGCACTGTTGACAGTGCTACATTGATTGTTGAATCCGATTACTTCATCGCCGCTAACATCCAAATCTCGAACTCTGCACCAAGACCTGATGGACAGAGGCCTGGAGCACAAGCAGTAGCATTGAGAATTTCCGGAGACAAGGCGTCGTTTTATAATAGCAAGTTTACTGGATTCCAAGACACAATCTGTGATGATAGACACAGACATTTCTTCAAGGACTGCATGATTCAAGGCACTGTTGATTTCATTTTTGGAAGTGGGAGGTCACTCTATTTGAACACAGAGTTGAATGTTCTTGGCGACAGTGGAATGACAGTGATAGTGGCACAAGCAAGAACAATGGACTCACAAGACTTACTCATTTGTGCATTGCACCGTAACTGGAACAGGGACTGGCTCTTACTTGGGTAG 807 0.4523 MAVTIFLTTSNVVLCDDNTPIPADKGQLDGWFNQNVGPLDQRKSSLDPSLVAAEEGSKVVKVMQDGSGDFKSITDAVNSIPSGNAKRVIIYIGAGKYNEKIRIERTKNFVTFYGAPGGEIPTLVYGGTAQQYGTVDSATLIVESDYFIAANIQISNSAPRPDGQRPGAQAVALRISGDKASFYNSKFTGFQDTICDDRHRHFFKDCMIQGTVDFIFGSGRSLYLNTELNVLGDSGMTVIVAQARTMDSQDLLICALHRNWNRDWLLLG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121726g00003 268 Pfam Pectinesterase 60 249 IPR000070 GO:0030599|GO:0042545
Stsc121726g00003 268 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 53 249 - -
Stsc121726g00003 268 Gene3D - 20 259 IPR012334 -
Stsc121726g00003 268 SUPERFAMILY Pectin lyase-like 58 251 IPR011050 -
Stsc121726g00003 268 ProSitePatterns Pectinesterase signature 2. 208 217 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121726g00003 Stsc-Chr121726 13820 15834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121726g00003 3 243 Carbohydrate Esterase AT1G69940 56.432 2.42e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121726g00003 K01051 - gmx:100813174 377.867