Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121721g00006 ATGGCTGCAAAACTTTATGGTGGAGCTTACCTCTCTTCCTTTGTTGATGCTGCTTTAGAAAACCTGTCTAAGATTCTTGAACATGATTCTGTCCTTAATGGAACCGATTCTACAAGAGAGTTGCTTCAAAGGTTGGAGAAAAGTCTGTTTGATGTTGCTCCGGTGCTTGACGATGCTGAGCTGAAGCAATTCACTGACAAGAGAGTCAAGAGGTGGCTTGTTGATCTCCAAGATGCTCTCTATTCCACTGATGACTACCTCAATGAACTCTCCACTAAAATTGCCACTGCCACTCCAAGGGATCCAGGTTTCTCTTCTTACTGTTCTTCTCTTGTTGATTCATATATTGAAGGTAGTCGTGACCTGGAACACATAGTTCGAACACTAGAGACTGCCGTAGCACGCAAAGCTTATCTTTGTCTGAAGGAGACTGCCAAGGTGGACATGTCATGGAGAATTCCATCCACATCTCTCGTTGTAACTTCTGACATATTTGGTCGGGACAAAGACAAGGAGGAGATAATCAAATTGTTGTTCGATGATACTTGTGATGCTGAATCACCTGTTACTGTGATCCCCATTTGGGGTATGGGTGGAATAGGAAAGACTACTCTGGCTCAACTGGTTTACAGTGATGCTGAAGTGGTGGAAAAATTTGACACTATGGCATGGGTGTGTGTTGCTGAAAATTTTGATCCTCTTGGCCTTACAAGGACTATGCTTCAGAAAATTAATCCTGCTTCTTCTGTTGACACGTATGATTTTGATTCACTTCAAACTCGTTTGAAAGAAGCGTTAATGAGAAAGACATTCTTAGTTGTTCTAGATGATGTCTGGCATGATCAAAAAGATACATGGGAGCATCTTCTTAAACCTTTTCAGTACGGAAATCATGCAAGTAAAATTCTTCTAACAACCCGTAGTGAAAAGGTGGCTTCTGTGGTGGCAACTACTAAACTACAGTACCAACTGAGTTTATTGTCCGAGGAAGATTGTTGGTTGGTGTTTCTAAAACAAGCACATCTTTCTGCTGACTCTATCAATCCAACTCTTGAAAAAGTCGGCAAAGATATCATCAAGAAGTGTGGCAGATTGCCCTTGGCAGTACAAGCCCTGGGAGGCTTATTACGTGGAAATTCTAATGTTATGTATTGGAATCAGATATTGAAGAGTGAGATTTGGGAATTTTCCCATGACAAGATAAAAGTTGTTCCGGCATTAAGAATCAGTTATTATTATCTACCTTCGTGTTTAAAAAAGTGCTTTGTTTATTGTTCCTTGTATCCCAAGGATTATGAGTTATCTAAAAGTGAGTTGATCTTGTTATGGATGGCGGAGAATTTTTTACAAATCTACACGATGCAATTGAGATTTCCCATTTGGAGAATGTGGTCAACAGTAGTGAAGCTTCGGAGGCAAGAATGTCTGAGAAATATGGCATTGATTCTTTGGCGTTGCATTGGTCTTCCGATGAAGATAAGCATATTGTTGATTCCGAAATTGAAAATGATATACAAGTTACGACCTCACAGTAATTTGAAACTGCTGGAAATCTGGGGTTACAGGAGTACAAGATTTCCAGATTGGTTGGGAAATTCTTCCTACCACAACATCACCGAAGTAACTCTCTATAATTGCAGGAATTGTCGTACGCTTCCATCACTTGGACAGTTGCCCTCTTTGAAGCACCTGGAAATTTCAGGTTTTGAAAGTGTGGAGACTGTAGGTGATGAGTTTTACCGAACTGATGAATCTTGTTGGGAGACTCCATTTCCAATGCTTGAAACTCTTTGGTATGAGTCCATGCCTTGCTGGAAGGAGTGGCGTTGTTCATTGGAGTTCAATGCATTGCCTCGACTCAGGAAGCTTACCATAAGGGAGTGTCCGATGTTGAGAGGGGATTTGCCCAATCAACTACCATCTTTGCAATCACTTTGGATTCAGAAATGCGAGCAGCTCAGTTGTTGTTGTCTTCCTCCTTTATTGAGTGTTCTATCAATTAGAGGAAAGCATCAAGTGGAGTCCATGGTAGAGGCCATTAAGCACACGCGCCTGACTTGTCTCACGTCCTTGTATATCTCAGATTGTTCCTCCCACTTATTGCTTCCAGTTGTTAACCATGTTACAATATGCATAAGTTCATTTGATTTAGGTTTTGATGAATGA 2166 0.4095 MAAKLYGGAYLSSFVDAALENLSKILEHDSVLNGTDSTRELLQRLEKSLFDVAPVLDDAELKQFTDKRVKRWLVDLQDALYSTDDYLNELSTKIATATPRDPGFSSYCSSLVDSYIEGSRDLEHIVRTLETAVARKAYLCLKETAKVDMSWRIPSTSLVVTSDIFGRDKDKEEIIKLLFDDTCDAESPVTVIPIWGMGGIGKTTLAQLVYSDAEVVEKFDTMAWVCVAENFDPLGLTRTMLQKINPASSVDTYDFDSLQTRLKEALMRKTFLVVLDDVWHDQKDTWEHLLKPFQYGNHASKILLTTRSEKVASVVATTKLQYQLSLLSEEDCWLVFLKQAHLSADSINPTLEKVGKDIIKKCGRLPLAVQALGGLLRGNSNVMYWNQILKSEIWEFSHDKIKVVPALRISYYYLPSCLKKCFVYCSLYPKDYELSKSELILLWMAENFLQIYTMQLRFPIWRMWSTVVKLRRQECLRNMALILWRCIGLPMKISILLIPKLKMIYKLRPHSNLKLLEIWGYRSTRFPDWLGNSSYHNITEVTLYNCRNCRTLPSLGQLPSLKHLEISGFESVETVGDEFYRTDESCWETPFPMLETLWYESMPCWKEWRCSLEFNALPRLRKLTIRECPMLRGDLPNQLPSLQSLWIQKCEQLSCCCLPPLLSVLSIRGKHQVESMVEAIKHTRLTCLTSLYISDCSSHLLLPVVNHVTICISSFDLGFDE 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121721g00006 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 425 IPR027417 -
Stsc121721g00006 721 SUPERFAMILY L domain-like 504 704 - -
Stsc121721g00006 721 Gene3D - 326 409 IPR042197 -
Stsc121721g00006 721 PRINTS Disease resistance protein signature 191 206 - -
Stsc121721g00006 721 PRINTS Disease resistance protein signature 362 376 - -
Stsc121721g00006 721 PRINTS Disease resistance protein signature 556 572 - -
Stsc121721g00006 721 PRINTS Disease resistance protein signature 265 279 - -
Stsc121721g00006 721 Gene3D Ribonuclease Inhibitor 474 639 IPR032675 -
Stsc121721g00006 721 Gene3D - 15 125 - -
Stsc121721g00006 721 Pfam Rx N-terminal domain 14 97 IPR041118 -
Stsc121721g00006 721 Gene3D - 410 458 IPR036388 -
Stsc121721g00006 721 FunFam Probable disease resistance protein At1g61300 150 319 - -
Stsc121721g00006 721 Gene3D - 148 321 IPR027417 -
Stsc121721g00006 721 PANTHER DISEASE RESISTANCE PROTEIN RP 49 450 IPR044974 GO:0006952
Stsc121721g00006 721 Pfam NB-ARC domain 168 391 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121721g00006 Stsc-Chr121721 22224 24613 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121721g00006 189 378 WRKY Transcription Factor Family AT5G45050 27.692 5.45e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121721g00006 - - ahf:112757051 570.466