Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121721g00003 ATGGCTGCAAAACTTTATGGTGGAGCTTACCTCTCTTCCTCTGTTGATGCTGCTTTAGACAACCTGTCCAAGATTCTTGAACATGATTCTGTCCTTAATGGAAACGATTCTACAAGAGAGTTGCTTGAAAGGTTGGAGAAAAGTCTGTTTGATGTTGCTCCTGTGCTTGACGATGCTGAGCTGAAGCAGTTCACTGACAAGAGAGTCAAGAAGTGGCTTGTTGATCTCCAAGATGCTCTCTATTTTGCTGACGACTACCTGGATGAACTCTCCACTAAAATTGCCACTGCCCCTCCAAGGGATCCAGGTTTCTCTTCTTACTGTTCTTCTCTTGTTGATTCATATATTGAAGGTAGTCGTGACCTGGAACACATAGTTCGAACACTAGAGACTGCCGTAGCACGCAAAGCTTATCTTCGTCTGAAGGAGACTGCCAAGGTGGACATGTCATGGAGAATTCCATCCACATCTCTCGTTGTAAGTTCTGACATATTTGGTCGGGACAAAGACAAGAAGGAGATAATCAAATTGTTGGTTGATGATACTTGTGATGCTGAATCACCTGTTACTGTGATCCCCATTTGGGGTATGGGTGGAATAGGAAAAACTACTCTGGCTCAACTGGTTTACAGTGATGCTGAAGTGGTGGAAAAATTTGATACTCTGGCATGGGTGTGTGTTGCTGAAAATTTTGATCCTGTTGGCCTTACAAGGACTATGCTTCAGAAAATAAATCCTGCTTCTTCTGTTGACACTTATGATTTTGATTCACTTCAAACTCGTTTGAAAGAAGCGTTAATGGGAAAGACATTCTTAGTTGTTCTAGATGATGTCTGGCATGATCAAAAAGATACATGGGAGCATCTTCTTAAACCTTTTCAGTACGGAAATCATGCAAGTAAAATTCTTCTAACAACCCGTAGTGAAAAGGTGGCTTCTGTGGTGGCAACTACTAAACTACAGTACCAACTGAGTTTATTGTCCGAGGAAGATTGTTGGTCGGTGTTTTTAAAACAAGCACATCTTTCTGCTGACTCTATCAATCCAACTCTTGAAGAAGTCGGCAAAGATATCATCAAGAAGTGTGGCAGATTGCCCTTGGCAGTACGAGCCCTGGGAGGCATATTAGGTGGAAATTCTGATGTCACGCATTGGAATCAGATATTGAAGAGTGAGATTTGGGAGTTTCCCCATGACAAGATCAATGTTGTTCCAGCATTAACAATTAGTTATCACTATCTACCTTCATGTTTAAAAAAGTGCTTTGTTTATTGTTCCTTGTATCCCAAGGATTTTGGGTTATCTAAAAGTGAGTTGATCTTGTTATGGATGGCGGAGAATTTTTTACAACCAGTACCAAGAAAGACTCTGGAAGAAGTTGGTGAAGAATATTTTGAAGAATTAGTTGCAAGATCGTTTTTGCAACCTCACAGCACTCATGAAGATGAATTTGTGATGCATGATCTCATGCATGATTTGGCAATGATCTTTGCTGGAGAGTTCTATTTCAGGGCTGAAGAGCTCAAGAATGATGTTGAGATTGATATCAAAACACGTCATTTGTCACGTATTGCACAAGGAAGTTATCCAATCTCAAAACTTGTTGAAGTTTGTGACAGAATGAAACACACAAGAACATTTCTTGAAATTAATTCGTCGGGATCTTATTTTCCATTTAACATGGGAAACACAAATTGTATCTTGTCACAGTTGAAGTACCTAAGATCTTTATCGTTCAAATTCTTTCCTCTTGAGTCACTACCCGATTCAATAGGCGAGTTGCTTCATTTGCGGTACTTGGATCTCTCTGAGACCAGGATTGTGACATTGCCAGAGTCATTGGGTAACTTGTACAATTTGCAGACCTTGAAGCTATTTAAGTGTCTCAATTTGAAAATGCTTCCAGTTAGCATTCAAGATCTTGTAAATTTACGCCATCTTGATATTAGATGGACTGGTTTGCACGAGATGCCGAAAGGCATGAGCAAGTTGCAAAGTTTGCAATTTTTAATAAGCTATGTTGTTGGGAAGCATGAAGGGAACAAGATTAACGAATTGGGAGGACTTGCAAATCTACACTATGCAATTGGGATTTCCCATTTGGAGAATGTGGTCAACAGTAGTGAAGCTTCGGAGGCAAGAATGTCTGAGAAATATGGCATTGATTCTTTGGCGTTGCGTTGGTCTTTGGATGAAGATAAGCATATTGTTGATTCCGAAATTGAAAATGATATACTAGACAAGTTAAGACCTCACAGTAATTTGAAACTGCTGGAAATCTGGGGTTACAGGAGTACAAGATTTCCAGATTGGTTGGGAAATTCTTCCTACCACAACATCACCGAAGTAACTCTCTATAATTGCAGGAATTGTCGTACGCTTCCATCACTTGGACAGTTGCCCTCTTTGAAGCACCTGGAAATTTCAGGTTTTGAAAGTGTGGAGACTGTAGGTGATGAGTTTTACCGAACTGATGAATCTTGTTGGGAGACTCCATTTCCAATGCTTGAAACTCTTTGGTATGAGTCCATGCCTTGCTGGAAGGAGTGGCGTTGTTCATTGGAGTTCAATGCATTGCCTCGACTCAGGAAGCTTACCATAAGGGAGTGTCCGATGTTGAGAGGGGATTTGCCCAATCAACTACCATCTTTGCAATCACTTTGGATTCAGAAATGCGAGCAGCTCAGTTGGTGTTGTCTTCCTCCTTTATTGAGTGATCTATCAATTGAAGGAGAGCATCAAGTGGAGTCCATGGTAGAGGCCATTAAGCACACGCAACTGACTTGCCTCACGTCCTTAAGCATCTCAGATTGTTCCTCCCAGTTATCGCTTCCAGTGAGTGCTATTCCCCCATCACTAGAGAAGTTGGAGATAAGGGATTGCAGCAAATTAGAATTCCAAATGGATGGCCAACATCACTCGCTGCAGCAACTATGGATAGAAAACAGCTGTGATTCAGTTACATCCTTCTCGTTGGATTCCTTTCCGAAACTCGTGCGTGTTTACATCAGGAGTTGTGAAAAGATGGAGACTGTTGTGGTGTCACGCTCTCTTTCATGTCTCCAGAGTTTAGATATCTGGAATTGCAAGAGTTTGAGATCCGTGTCGACACTATGGATGTTAGCACCTCACTTAAAAGATCTCATATTACTGCGTTGCCCAGAGATTGAATTGTCCGCTACAGGGGATCCACGCAGTAGCCTGAGATCTCTTGAAATCAGCTACTCCGAGAAGCTGGTCAGCTCTGCAGCATTCATGAATTCCCAATTTCATGGGCTTTCTCATCTTGTCATTGATGGTGATGAGATTCACGAGAGTGAGAGTGTGAAGTGCCTCCCAAAGGAAGGTTGGTTGCCTGCCTCACTTGAGTCTCTCACACTGCGTGACATTAAAAGTGTGGAGACGTTGGAATGCAAGGGACTTGCCCACCTCACCTCCCTCAAAGAATTACATATATTTTATTGTCCAAAGTTGGAGAATATCGAGGGAGAAAAGCTGCCTGCCTCTCTAATACGACTCATCATCAATAGAACCCCTTTGTTGGGTAATAAGTTTTGCATGATGGACCCACAGGTTTGGCCCAAAATTTCCCACATCCAAGAGATTTCCCACATCGAAAGATTTCAATTTGATGAAGATGGATCTGATAACACAAGAACTTAA 3663 0.4169 MAAKLYGGAYLSSSVDAALDNLSKILEHDSVLNGNDSTRELLERLEKSLFDVAPVLDDAELKQFTDKRVKKWLVDLQDALYFADDYLDELSTKIATAPPRDPGFSSYCSSLVDSYIEGSRDLEHIVRTLETAVARKAYLRLKETAKVDMSWRIPSTSLVVSSDIFGRDKDKKEIIKLLVDDTCDAESPVTVIPIWGMGGIGKTTLAQLVYSDAEVVEKFDTLAWVCVAENFDPVGLTRTMLQKINPASSVDTYDFDSLQTRLKEALMGKTFLVVLDDVWHDQKDTWEHLLKPFQYGNHASKILLTTRSEKVASVVATTKLQYQLSLLSEEDCWSVFLKQAHLSADSINPTLEEVGKDIIKKCGRLPLAVRALGGILGGNSDVTHWNQILKSEIWEFPHDKINVVPALTISYHYLPSCLKKCFVYCSLYPKDFGLSKSELILLWMAENFLQPVPRKTLEEVGEEYFEELVARSFLQPHSTHEDEFVMHDLMHDLAMIFAGEFYFRAEELKNDVEIDIKTRHLSRIAQGSYPISKLVEVCDRMKHTRTFLEINSSGSYFPFNMGNTNCILSQLKYLRSLSFKFFPLESLPDSIGELLHLRYLDLSETRIVTLPESLGNLYNLQTLKLFKCLNLKMLPVSIQDLVNLRHLDIRWTGLHEMPKGMSKLQSLQFLISYVVGKHEGNKINELGGLANLHYAIGISHLENVVNSSEASEARMSEKYGIDSLALRWSLDEDKHIVDSEIENDILDKLRPHSNLKLLEIWGYRSTRFPDWLGNSSYHNITEVTLYNCRNCRTLPSLGQLPSLKHLEISGFESVETVGDEFYRTDESCWETPFPMLETLWYESMPCWKEWRCSLEFNALPRLRKLTIRECPMLRGDLPNQLPSLQSLWIQKCEQLSWCCLPPLLSDLSIEGEHQVESMVEAIKHTQLTCLTSLSISDCSSQLSLPVSAIPPSLEKLEIRDCSKLEFQMDGQHHSLQQLWIENSCDSVTSFSLDSFPKLVRVYIRSCEKMETVVVSRSLSCLQSLDIWNCKSLRSVSTLWMLAPHLKDLILLRCPEIELSATGDPRSSLRSLEISYSEKLVSSAAFMNSQFHGLSHLVIDGDEIHESESVKCLPKEGWLPASLESLTLRDIKSVETLECKGLAHLTSLKELHIFYCPKLENIEGEKLPASLIRLIINRTPLLGNKFCMMDPQVWPKISHIQEISHIERFQFDEDGSDNTRT 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121721g00003 1220 Gene3D - 14 124 - -
Stsc121721g00003 1220 FunFam Probable disease resistance protein At1g61300 150 319 - -
Stsc121721g00003 1220 Gene3D Ribonuclease Inhibitor 558 705 IPR032675 -
Stsc121721g00003 1220 Gene3D Ribonuclease Inhibitor 722 881 IPR032675 -
Stsc121721g00003 1220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 425 IPR027417 -
Stsc121721g00003 1220 FunFam Probable disease resistance protein At1g63360 411 496 - -
Stsc121721g00003 1220 Pfam NB-ARC domain 168 410 IPR002182 GO:0043531
Stsc121721g00003 1220 Gene3D - 326 409 IPR042197 -
Stsc121721g00003 1220 PANTHER DISEASE RESISTANCE PROTEIN RP 49 961 IPR044974 GO:0006952
Stsc121721g00003 1220 SMART LRR_typ_2 641 664 IPR003591 -
Stsc121721g00003 1220 SMART LRR_typ_2 594 617 IPR003591 -
Stsc121721g00003 1220 SUPERFAMILY L domain-like 484 963 - -
Stsc121721g00003 1220 Pfam Rx N-terminal domain 15 97 IPR041118 -
Stsc121721g00003 1220 SUPERFAMILY L domain-like 926 1183 - -
Stsc121721g00003 1220 Gene3D Ribonuclease Inhibitor 882 1211 IPR032675 -
Stsc121721g00003 1220 Gene3D - 148 321 IPR027417 -
Stsc121721g00003 1220 Gene3D - 410 495 IPR036388 -
Stsc121721g00003 1220 PRINTS Disease resistance protein signature 191 206 - -
Stsc121721g00003 1220 PRINTS Disease resistance protein signature 265 279 - -
Stsc121721g00003 1220 PRINTS Disease resistance protein signature 592 608 - -
Stsc121721g00003 1220 PRINTS Disease resistance protein signature 362 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121721g00003 Stsc-Chr121721 12441 16103 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121721g00003 189 378 WRKY Transcription Factor Family AT5G45050 28.426 1.66e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121721g00003 - - aip:107626318 1507.27