Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121704g00005 ATGGTCTTTCCGATAGTTGCTGCTTCTGTGGTTGGAGTTCTAGCCCTTGCCGTGATGGCCTTTCTTTTCTATCGAAGGCAAAAGAAGACCAGTTATGGAATGTCTTCTGATCCATCATCTTTGAAAGATACTGACAAGAGAAGTCAACATAATGGAGCGCAACTTCACCATTCTCCTCCTACTACGTGGCACTACGCTAGTTCAGGTGCCGGATTGTTGGCTACTTGTTTTACGTGTAAGTCATTAAGGATAAAGGGTAACCAAGATATTGAAACCTTCTTAGAAAACCATGGAGTCTTAACTCTGAAGAGATATAAATTCTCAGAAGTGAAGAAAATGACCAACTCTTTCAAAGTTAAACTAGGACAAGGTGGTTTTGGTACCGTGTACAAGGGAAAGCTACCCAATGGTTCTCATGTAGCTGTCAAAATGTTGCATCAATCCAAAGGATATGGAGAAGAATTTATTAATGAGGTAGCTAGCATTTGTAGAACTTCTCATGTTAATGTTGTCACCCTTCTTGGCTTTTGCTTAGAAGGCCACAAAAAAGTTCTCATCTATGAGTTCATGTCTAATGGTTCCCTTGACAATTTTATTTTCAAAAAGGAACCTAAGAATACTCCACTCTTGTGTTGGGAAAAATTGTATCAAATTTCCATAGGCATAGCAAGAGGGTTGGAGTATTTGCATAGAGGATGCAACATTAGAATTTTGCATTTTGACATAAAACCACATAATATTCTTTTGGATGAAAGCTTTTGTCCTAAGATATCAGATTTCGGTCTAGCAAAGCTTTGTCCTAGAAAAGAAAGTCATATTTCCATGTCCGAAACAAGAGGAACAATAGGGTACATAGCTCCTGAAGTGTTCAATAGAAACTTTGGTAGGGTTTCACACAAATCAGATGTTTATAGCTTTGGAATGATGCTTATAGAAATGGTGGGGATGAAGGAGAACAACAAAATTGCAGAAACAGGTCAAAGAAGTGAAAAGTACTTCCCCGATTGGATATACAAAAAGCTTGAACAAGGCACTCAAGAAGGACTTGCTGATGGAGAGTTATCAATGGAGGAAAATGATGTTGTGAAGAAGATGACAGTGGTGGGTTTATGGTGTATTCAACCAATTCCAGATGATAGACCAACAATGAGCAAAGTTGTGGAAATGTTGGAAGGTACCATGAATTCCCTGGAAATGCCTCCAGGACCTGTTATGTCTTCTCCAATAAGATTAGCCTTAGAATCTTCTACGATATCTTCTTCGTTGGTAGAGTCTTCTTCTATTGTTAATTAA 1293 0.3844 MVFPIVAASVVGVLALAVMAFLFYRRQKKTSYGMSSDPSSLKDTDKRSQHNGAQLHHSPPTTWHYASSGAGLLATCFTCKSLRIKGNQDIETFLENHGVLTLKRYKFSEVKKMTNSFKVKLGQGGFGTVYKGKLPNGSHVAVKMLHQSKGYGEEFINEVASICRTSHVNVVTLLGFCLEGHKKVLIYEFMSNGSLDNFIFKKEPKNTPLLCWEKLYQISIGIARGLEYLHRGCNIRILHFDIKPHNILLDESFCPKISDFGLAKLCPRKESHISMSETRGTIGYIAPEVFNRNFGRVSHKSDVYSFGMMLIEMVGMKENNKIAETGQRSEKYFPDWIYKKLEQGTQEGLADGELSMEENDVVKKMTVVGLWCIQPIPDDRPTMSKVVEMLEGTMNSLEMPPGPVMSSPIRLALESSTISSSLVESSSIVN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121704g00005 430 FunFam S-receptor-like serine/threonine-protein kinase 85 189 - -
Stsc121704g00005 430 Gene3D Transferase(Phosphotransferase) domain 1 190 399 - -
Stsc121704g00005 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Stsc121704g00005 430 SMART serkin_6 115 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121704g00005 430 MobiDBLite consensus disorder prediction 31 60 - -
Stsc121704g00005 430 Gene3D Phosphorylase Kinase; domain 1 78 189 - -
Stsc121704g00005 430 PANTHER RUST RESISTANCE KINASE LR10-RELATED 87 407 IPR045874 GO:0004672
Stsc121704g00005 430 FunFam PR5-like receptor kinase 190 401 - -
Stsc121704g00005 430 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Stsc121704g00005 430 ProSiteProfiles Protein kinase domain profile. 115 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121704g00005 430 CDD STKc_IRAK 121 392 - -
Stsc121704g00005 430 SUPERFAMILY Protein kinase-like (PK-like) 97 391 IPR011009 -
Stsc121704g00005 430 Pfam Protein tyrosine and serine/threonine kinase 117 390 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121704g00005 Stsc-Chr121704 21902 23612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121704g00005 21 428 Receptor kinase-like Gene Family AT1G66910 48.333 1.60e-129 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc121704g00005 PK_Tyr_Ser-Thr 5.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121704g00005 - - ahf:112751085 608.601