Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121704g00003 ATGGATAACCGTATCGATATCCATGTCCATGTCCATATGCATATACCACCCATAACCATAAGGAGCTTGATACGTTTGTTGTTGCTAATAAACACTTTGATGATACCATCACTTTCTCAACAACCACTTTCCAACCGCTACTCCGTTTGCACACAACACCCATACAACTGCGGAACCCTTTCCATTGTATCCTATCCTTTCTGGGGAGGAGACCGGCCCTCCTACTGCGGCGGCGGCAACCAATTCAACCTCGTCTGCGAGACCGGCCTCACTACTTCCATTCAAATCACCTCGCAGAAATTCCAGGTGATCTTCATTGACACCGTAGAAAACAAGATGAGAATGATGCCCATGCCACAAGAAGAACACGATTTTTGTTCCATGAAATTGGACTTCAACCTGACCAGCCCCTCCTTCTGGTACTCTGAAACTGTCCAGAACATCACCATATTCTACGACTGTCCCTCTGGAATTTCCAACTTTACGTGCCCCTCATCATTGCCAAATCATGAGAATAACAATAATAACAGTAATAATGTTATCTTTTATGAGGGTGTGGAAGAGCAGGTGTTGAAGGAGCACCCGAAGCTGAAGGAATGCGGACGTAATTTGCGAGTGGCAAGTGATGAGGATGTTATGAACCCTACTGTTACAGTTGATAATCAAATCTTTGAAGCCCTTAACAGAGGTTTCCATGTGGAGTATAGAATCCCAAAAGAATGCAAGAGATGCATGAGAAGTGGAGGAGTTTGCGGAAGCAGCAGTGGTGACCCAGATGGATCTAACGCCGCCCTCTCTTGTTATGTTCCACATCTCACAAGTTTTGTAGTCATAGTTATTCCAGGATTAGCTTTGATATATATCTGTATAGTTTGTTGGCTAAGATGCAAATCATCAAACTGGGAAGAAGTATTTTGGTTCACAAGTAAAAGTAACCAAGACATTGAAGCAATCTTAAAAAGTCAAGGAGCACTAAGTCTCAAAAGATATAAATTCTCAGATGTGAAGAAAATGACTAGCTCCTTCAAAGTTAAACTTGGACAAGGTGGTTTTGGTACTGTATACAAGGGAAATATACTAAAAGGTTCTGATGTGGCTGTAAAAATCTTGAATCTCTCCAAAGGAAAGGGTAAAGAATTTATCAATGAGGTAGCTAGTATTAGCAAAACTTCTCACATAAACATTGTTACCCTTTTTGGATTTTGCTTAGAAGGCAACAAAAGAGCACTCATTTACGAGTTCATGTCTAATGGTTCTCTTGATAAGTTCATTTACAAAGAGGGACATGATGAAAGTACTCCATCCTTGAGTTGGGATCAGTTATACCAAATCGCAATAGGAATAGCTAGAGGGCTAGAGTATTTGCATAAGGAATGTAACACTCGAATTTTTCATTTTGACATAAAACCGCATAATATTCTTTTGGACGAAAACTTTTGTCCTAAGATATCTGATTTTGGGCTAGCAAAACTCAGTCTTAGAAGTGAGGAAAGCGTCATTTCCTTGTCTGATGCTAGAGGAACCATGGGATATGTGGCTCCGGAAATGTGGAATAAACATCTTGGTGGAATTTCTCATAAATCAGACGTTTACAGCTATGGAATGATGTTACTAGAAATTGTGGGAGGAAGAAATAACATTCATGCAGAAGCAAGTCATACGAGTGAGATATATTTTCCTTATTGGATACACAAAAAGCTTGAGCAAGACACTCAATTGGGCAGTAACAGAATTGCAGAAAATGAGACAGCTAAAAGAATGATTGTAGTGGGTTTATGGTGCATTCAAACATTACCAAATGACAGACCATCAATGAGTAGAGTTATAAATATGTTGGAAGGCAGCATGGATTCTTTGGAAATGCCACCTAAACCTATTTTATCTGCTACATGTGATCAGTAG 1902 0.3991 MDNRIDIHVHVHMHIPPITIRSLIRLLLLINTLMIPSLSQQPLSNRYSVCTQHPYNCGTLSIVSYPFWGGDRPSYCGGGNQFNLVCETGLTTSIQITSQKFQVIFIDTVENKMRMMPMPQEEHDFCSMKLDFNLTSPSFWYSETVQNITIFYDCPSGISNFTCPSSLPNHENNNNNSNNVIFYEGVEEQVLKEHPKLKECGRNLRVASDEDVMNPTVTVDNQIFEALNRGFHVEYRIPKECKRCMRSGGVCGSSSGDPDGSNAALSCYVPHLTSFVVIVIPGLALIYICIVCWLRCKSSNWEEVFWFTSKSNQDIEAILKSQGALSLKRYKFSDVKKMTSSFKVKLGQGGFGTVYKGNILKGSDVAVKILNLSKGKGKEFINEVASISKTSHINIVTLFGFCLEGNKRALIYEFMSNGSLDKFIYKEGHDESTPSLSWDQLYQIAIGIARGLEYLHKECNTRIFHFDIKPHNILLDENFCPKISDFGLAKLSLRSEESVISLSDARGTMGYVAPEMWNKHLGGISHKSDVYSYGMMLLEIVGGRNNIHAEASHTSEIYFPYWIHKKLEQDTQLGSNRIAENETAKRMIVVGLWCIQTLPNDRPSMSRVINMLEGSMDSLEMPPKPILSATCDQ 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121704g00003 633 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Stsc121704g00003 633 SMART serkin_6 340 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121704g00003 633 Gene3D Phosphorylase Kinase; domain 1 312 414 - -
Stsc121704g00003 633 Pfam Wall-associated receptor kinase galacturonan-binding 50 115 IPR025287 GO:0030247
Stsc121704g00003 633 Pfam Wall-associated receptor kinase C-terminal 172 255 IPR032872 -
Stsc121704g00003 633 FunFam PR5-like receptor kinase 415 624 - -
Stsc121704g00003 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Stsc121704g00003 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 310 627 IPR045874 GO:0004672
Stsc121704g00003 633 Pfam Protein kinase domain 343 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121704g00003 633 Gene3D Transferase(Phosphotransferase) domain 1 415 621 - -
Stsc121704g00003 633 SUPERFAMILY Protein kinase-like (PK-like) 324 613 IPR011009 -
Stsc121704g00003 633 ProSiteProfiles Protein kinase domain profile. 340 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121704g00003 633 FunFam serine/threonine-protein kinase PBS1-like 308 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121704g00003 Stsc-Chr121704 4070 7351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121704g00003 55 627 Receptor kinase-like Gene Family AT1G66910 39.542 4.95e-131 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc121704g00003 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121704g00003 - - adu:107490378 635.18