Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121696g00005 ATGAGGAACAAGTGTGAGCTCTGCAAACGTTCTGCAAACTTGTTCTGTGAATCAGATCAAGCAAGCCTTTGTTGGGAATGTGATGCAAAGGTTCACGGTGCAAACTTTCTTGTCACAAAGCATCCAAGGGTTCTTCTATGCCATGTTTGTCAATCACTAACACCTTGGCATGCCTCAGGACCCAAGTTTGTTCCCACCATGTCTCTCTGCACTGATTGTGTCACCAGAAACAATGATACCTGCAACCAACAGAATAACGATGACGACGACGAAAACGACGAGGATGTAGAAAATGATGGGGTTGAGGATGAAGATGAAGAAGAAAATCAAGTGGTTCCATGGACATCATCAACATCAATGCCTCCACCACCAGTTTCCTCTTCTTCAAATAGTGCAACCACTTCTACCAGGTTCTCTAATGGTGCTGAAGAAGAAGCAATCTCCAATTGA 450 0.44 MRNKCELCKRSANLFCESDQASLCWECDAKVHGANFLVTKHPRVLLCHVCQSLTPWHASGPKFVPTMSLCTDCVTRNNDTCNQQNNDDDDENDEDVENDGVEDEDEEENQVVPWTSSTSMPPPPVSSSSNSATTSTRFSNGAEEEAISN 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121696g00005 149 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Stsc121696g00005 149 MobiDBLite consensus disorder prediction 81 149 - -
Stsc121696g00005 149 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Stsc121696g00005 149 CDD Bbox1_BBX-like 4 46 - -
Stsc121696g00005 149 MobiDBLite consensus disorder prediction 84 110 - -
Stsc121696g00005 149 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 140 - -
Stsc121696g00005 149 SMART bboxneu5 1 46 IPR000315 GO:0008270
Stsc121696g00005 149 MobiDBLite consensus disorder prediction 111 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121696g00005 Stsc-Chr121696 20972 21421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121696g00005 1 122 C2C2-CO-like Transcription Factor Family AT4G27310 37.805 8.93e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc121696g00005 zf-B_box 9.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121696g00005 - - gmx:100805832 140.198