Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121696g00002 ATGGAGTTTGATCTTGAAGACCCTTTATCCTGCTTCAAGGAACAACAAGCTTACACCATAACAGAACTCTTTGCTTCTGAATCTGATCACATGCCGGCCCCAAACTGCTTGAATTCAACACATTTTCGTGCTTCCTTTCGTTGCGAAGCCATTTCTCTCATACTTCAGGTCCAGTTTTCATGCAATTTGGAACCTTCTGTAGCTTATCTAGCTACAAATTACTTGCACCGCTTCATGTCAAGGCAAGAAATTCCGATGGAGAAGCCATGGTTACTGAAACTTGTTGTCATATCCTGTCTTTCTCTTGCTTCAAAGATGAAGAACACACCCTTATCAATTTCTGATATACAGATGGAAGGTTACATCTTTGAGGCTCAAACTATTCGGAGGATGGAACTTGTTATTCTTGGGGCTCTGAAATGGCGAATGAGGTCAATTACACCTTTTCCTTTCTTGCATTTCTTCATCTCTTCAGCTGAACTCAAAGATTCATCACTGAAGCAAGTACTTAAAGAGCAAGCTACAAAGATAATCTTCAATGCTCACAATGACATTAAGCTTTTAGAGTATAAACCTTCAACTATTGCAGCATCTGCTCTTATCTCTGCATCTCGGGAACTATGCTCGCAGCAATATACTATGCTGAGAGCTTCAATTGCAGCTTGTGAGTATCTAGATGAGGATTCATTGATAAAGTGCATTGACCTCATGCAAGAGATGGTGATGAGGACAGAAGCGAACGAGTCAACCATCGACACAAGCTTTTTAAGCAATGAAACTCCGGTGAGCGTGCTGGAGAGAAGCATCAAGCGGCGGAGAATTTAA 825 0.4133 MEFDLEDPLSCFKEQQAYTITELFASESDHMPAPNCLNSTHFRASFRCEAISLILQVQFSCNLEPSVAYLATNYLHRFMSRQEIPMEKPWLLKLVVISCLSLASKMKNTPLSISDIQMEGYIFEAQTIRRMELVILGALKWRMRSITPFPFLHFFISSAELKDSSLKQVLKEQATKIIFNAHNDIKLLEYKPSTIAASALISASRELCSQQYTMLRASIAACEYLDEDSLIKCIDLMQEMVMRTEANESTIDTSFLSNETPVSVLERSIKRRRI 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121696g00002 274 SUPERFAMILY Cyclin-like 127 244 IPR036915 -
Stsc121696g00002 274 SUPERFAMILY Cyclin-like 12 143 IPR036915 -
Stsc121696g00002 274 SMART cyclin_7 52 137 IPR013763 -
Stsc121696g00002 274 CDD CYCLIN_AtCycD-like_rpt2 146 237 - -
Stsc121696g00002 274 FunFam D6-type cyclin 32 141 - -
Stsc121696g00002 274 Pfam Cyclin, C-terminal domain 146 250 IPR004367 -
Stsc121696g00002 274 PIRSF Cyclin_A_B_D_E 22 268 IPR046965 GO:0016538|GO:0044772
Stsc121696g00002 274 Gene3D - 33 144 - -
Stsc121696g00002 274 SMART Cyclin_C_2 146 268 IPR004367 -
Stsc121696g00002 274 PANTHER CYCLINS 29 244 IPR039361 -
Stsc121696g00002 274 Gene3D - 22 235 - -
Stsc121696g00002 274 Pfam Cyclin, N-terminal domain 21 143 IPR006671 -
Stsc121696g00002 274 FunFam D6-type cyclin 142 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121696g00002 Stsc-Chr121696 10203 11805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121696g00002 1 267 Core Cell Cycle Gene Families AT4G03270 44.484 1.18e-66 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121696g00002 K18812 - gmx:100799985 377.096