Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121684g00004 ATGCACAGTTTGATAAAGAATGCTACTGTGGAGACCAAGCTGTTGTATGCAATGAGTGAGTTCAATTCTGGTGGCTCATTAGGGCAAAGGTATGGGTTGGTGCAGTGTAGTAGGGACCTTACTAGTGAGCAATGCAGCCAGTGTTTGAATGATATGTTGGATCAAGTTCCTAAATGTTGTGCTACAAAAGTTGGATGGCAAGTTTTGGCTCCAAGTTGTTTGATCAAGTATGATGATTTTATGTTCTACAAGTTGGTTACTACTAGTCAAGCACCTGCCGATCCATCATTGAATTCAGCCAACAAAAACGGTACAAGTAAGACAAAAACCATAGTCATCATAGTGAGTGTGCTGGCGGCAGTAGTTCTACTAAGCTGTGGCATTTACTTTTTATGGCGGAGGAATCAATCAAACGATGAGGCATTATTGTCAGAAAGCACTCCTATATCAATGCATTATAACCCTCAAGGTCAAGGAGATGATTCATTGAATGCTGATCTTCCCACAATTCCTCTAATTTGGATTAGAAGGAGCACTAATAACTTTTCAGATTCTTGCAAATTAGGGGAAGGTGGATTTGGTCCTGTTTATAAGGGAAATTTACAAGATGGGACAGAAGTTGCCATCAAGAGACTCTCAAAAACATCTGGTCAAGGTTTAGATGAATTCAAAAATGAAGTAATCTTCATAGCCAAATTACAACATAGGAACCTTGTGAGATTGCTGGGTTGTTGTGTTGAGGAAAATGAAAAGCTGCTTGTATACGAGTACATGTCCAATTCCAGCCTTGCCCTTCATCTATTCGATGTGGAAAAACGAAAGCAACTAAGTTGGAAGATTCGAATGAATATTATCAATGGAATTGCTAGAGGACTTCTATATCTTCACGAAGATTCTAGACTCAAAGTAATACATAGAGATATGAAAGCTAGTAATGTTCTTCTTGATCAACATATGAATCCAAAAATATCAGATTTTGGATTAGCAAGAGCATTTGAAAAAGACCAAAATGAAGAAAATACTAGAAGAATTATGGGTACCTACGGATATATGGCTCCGGAATATGCAATGGAAGGGTTATACTCAGTGAAACCCGACGTTTTTAGTTTTGGAGTTCTTTTACTAGAAATCATTTGTGGCAAAAAGAACAGCGGATTCTATCTTTCAGAACATGGGCAAAGTCTTCTTGTATATAGTTGGAGACTGTGGTGTGAAGGAGAATGTCTAAAGCTGGTAGATCCTATACTAGAAAACACATACACAAGAAATGAAGTTATAAGGTGTATACATGTTGGTTTGCTATGTGTACAAGAAGATGCAGTAGATCGACCTACGATGTCTACAGTTATTGTTATGCTAGCAAGTGAGACAATGGCACTTCCTAAACCTAATCATCCTGCATTTTCAGTCGGAAGAAAGATCAATAAAGAAGAAGAGTCAACCTCAAAGGCATCTAAGGATTATCCTTCTGTCAATGAAGTATCAGTTTCTAATATTTTACCTAGATAA 1509 0.3771 MHSLIKNATVETKLLYAMSEFNSGGSLGQRYGLVQCSRDLTSEQCSQCLNDMLDQVPKCCATKVGWQVLAPSCLIKYDDFMFYKLVTTSQAPADPSLNSANKNGTSKTKTIVIIVSVLAAVVLLSCGIYFLWRRNQSNDEALLSESTPISMHYNPQGQGDDSLNADLPTIPLIWIRRSTNNFSDSCKLGEGGFGPVYKGNLQDGTEVAIKRLSKTSGQGLDEFKNEVIFIAKLQHRNLVRLLGCCVEENEKLLVYEYMSNSSLALHLFDVEKRKQLSWKIRMNIINGIARGLLYLHEDSRLKVIHRDMKASNVLLDQHMNPKISDFGLARAFEKDQNEENTRRIMGTYGYMAPEYAMEGLYSVKPDVFSFGVLLLEIICGKKNSGFYLSEHGQSLLVYSWRLWCEGECLKLVDPILENTYTRNEVIRCIHVGLLCVQEDAVDRPTMSTVIVMLASETMALPKPNHPAFSVGRKINKEEESTSKASKDYPSVNEVSVSNILPR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121684g00004 502 SMART serkin_6 182 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121684g00004 502 Gene3D Transferase(Phosphotransferase) domain 1 258 463 - -
Stsc121684g00004 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Stsc121684g00004 502 ProSiteProfiles Gnk2-homologous domain profile. 1 82 IPR002902 -
Stsc121684g00004 502 MobiDBLite consensus disorder prediction 485 502 - -
Stsc121684g00004 502 FunFam Liguleless narrow1 258 461 - -
Stsc121684g00004 502 CDD STKc_IRAK 188 453 - -
Stsc121684g00004 502 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 498 - -
Stsc121684g00004 502 ProSiteProfiles Protein kinase domain profile. 182 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121684g00004 502 Gene3D Phosphorylase Kinase; domain 1 150 257 - -
Stsc121684g00004 502 Gene3D - 1 82 IPR038408 -
Stsc121684g00004 502 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 149 257 - -
Stsc121684g00004 502 Pfam Domain of unknown function (DUF3403) 455 502 IPR021820 GO:0004674
Stsc121684g00004 502 Pfam Protein tyrosine and serine/threonine kinase 186 449 IPR001245 GO:0004672|GO:0006468
Stsc121684g00004 502 SUPERFAMILY Protein kinase-like (PK-like) 167 468 IPR011009 -
Stsc121684g00004 502 MobiDBLite consensus disorder prediction 469 502 - -
Stsc121684g00004 502 Pfam Salt stress response/antifungal 20 78 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121684g00004 Stsc-Chr121684 6481 12877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121684g00004 26 470 Receptor kinase-like Gene Family AT4G23230 50.000 1.95e-148 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121684g00004 PK_Tyr_Ser-Thr 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121684g00004 - - ahf:112718031 807.364