Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121684g00003 ATGATGGAAGAAACAAAACTCATCATGATCAGTACTACTACTACTACTCAGCTTAGATTATTTCTTTGCTTCTTGTTATTGAGCTTCTTCATCAGAACAATAACAGCACAATCACCATCACCAAACTACGTTGGAGATGACTGCAAAAACTCAACACAACAATCTCTAACAAGTGGATACAAAACCAACCTCAACAGTGTCCTTTCATGGCTATCTTCTGATGCTGCCACAAGCAAGGGTTACAACCACACCGCCATCGGAACCGCCACAAGCGATGCCGTCTATGGCCTCTATGACTGCAGAGGTGATGTGACGGGCACCTTCTGCCAGTTTTGTGTCTCCACTGCAGCTTCGGACATTCTTCAGCACTGTCCAAACAGGTCATCCGCAGTGATATGGTATAACTACTGCATACTCAGATACTCCAATCATGACTTCATCGGTAACCTTACAATAACCCCATCATGGCAATTTCCTGGGACCAAGAACGCCACCAACAGCACTCAAGAGCTCCAAAATGCAGACACTAACATGCACAGTTTGATAAAGAATGCTACTGTGGAGACCAAGCTGTTGTATGCAATGAGTGAGTTCAATTCTGGTGGCTCATTAGGGCAAAGGTATGGGTTGGTGCAGTGTAGTAGGGACCTTACTAGTGAGCAATGCAGCCAGTGTTTGAATGATATGTTGGATCAAGTTCCTAAATGTTGTGCTACAAAAGTTGGATGGCAAGTTTTGGCTCCAAGTTGTTTGATCAAGTATGATGATTTTATGTTCTACAAGTTGGTTACTACTAGTCAAGCACCTGCCGATCCATCATTGAATTCAGCCAACAAAAACGGTACAAGTAAGACAAAAACCATAGTCATCATAGTGAGTGTGCTGGCGGCAGTAGTTCTACTAAGCTGTGGCATTTACTTTTTATGGCGGAGGAATCAATCAAACGATGAGGCATTATTGTCAGAAAGCACTCCTATATCAATGCATTATAACCCTCAAGGTCAAGGAGATGATTCATTGAATGCTGATCTTCCCACAATTCCTCTAATTTGGATTAGAAGGAGCACTAATAACTTTTCAGATTCTTGCAAATTAGGGGAAGGTGGATTTGGTCCTGTTTATAAGGGAAATTTACAAGATGGGACAGAAGTTGCCATCAAGAGACTCTCAAAAACATCTGGTCAAGGTTTAGATGAATTCAAAAATGAAGTAATCTTCATAGCCAAATTACAACATAGGAACCTTGTGAGATTGCTGGGTTGTTGTGTTGAGGAAAATGAAAAGCTGCTTGTATACGAGTACATGTCCAATTCCAGCCTTGCCCTTCATCTATTCGATGTGGAAAAACGAAAGCAACTAAGTTGGAAGATTCGAATGAATATTATCAATGGAATTGCTAGAGGACTTCTATATCTTCACGAAGATTCTAGACTCAAAGTAATACATAGAGATATGAAAGCTAGTAATGTTCTTCTTGATCAACATATGAATCCAAAAATATCAGATTTTGGATTAGCAAGAGCATTTGAAAAAGACCAAAATGAAGAAAATACTAGAAGAATTATGGGTACCTACGGATATATGGCTCCGGAATATGCAATGGAAGGGTTATACTCAGTGAAACCCGACGTTTTTAGTTTTGGAGTTCTTTTACTAGAAATCATTTGTGGCAAAAAGAACAGCGGATTCTATCTTTCAGAACATGGGCAAAGTCTTCTTGTATATAGTTGGAGACTGTGGTGTGAAGGAGAATGTCTAAAGCTGGTAGATCCTATACTAGAAAACACATACACAAGAAATGAAGTTATAAGGTGTATACATGTTGGTTTGCTATGTGTACAAGAAGATGCAGTAGATCGACCTACGATGTCTACAGTTATTGTTATGCTAGCAAGTGAGACAATGGCACTTCCTAAACCTAATCATCCTGCATTTTCAGTCGGAAGAAAGATCAATAAAGAAGAAGAGTCAACCTCAAAGGCATCTAAGGATTATCCTTCTGTCAATGAAGTATCAGTTTCTAATATTTTACCTAGATAA 2040 0.3956 MMEETKLIMISTTTTTQLRLFLCFLLLSFFIRTITAQSPSPNYVGDDCKNSTQQSLTSGYKTNLNSVLSWLSSDAATSKGYNHTAIGTATSDAVYGLYDCRGDVTGTFCQFCVSTAASDILQHCPNRSSAVIWYNYCILRYSNHDFIGNLTITPSWQFPGTKNATNSTQELQNADTNMHSLIKNATVETKLLYAMSEFNSGGSLGQRYGLVQCSRDLTSEQCSQCLNDMLDQVPKCCATKVGWQVLAPSCLIKYDDFMFYKLVTTSQAPADPSLNSANKNGTSKTKTIVIIVSVLAAVVLLSCGIYFLWRRNQSNDEALLSESTPISMHYNPQGQGDDSLNADLPTIPLIWIRRSTNNFSDSCKLGEGGFGPVYKGNLQDGTEVAIKRLSKTSGQGLDEFKNEVIFIAKLQHRNLVRLLGCCVEENEKLLVYEYMSNSSLALHLFDVEKRKQLSWKIRMNIINGIARGLLYLHEDSRLKVIHRDMKASNVLLDQHMNPKISDFGLARAFEKDQNEENTRRIMGTYGYMAPEYAMEGLYSVKPDVFSFGVLLLEIICGKKNSGFYLSEHGQSLLVYSWRLWCEGECLKLVDPILENTYTRNEVIRCIHVGLLCVQEDAVDRPTMSTVIVMLASETMALPKPNHPAFSVGRKINKEEESTSKASKDYPSVNEVSVSNILPR 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121684g00003 679 MobiDBLite consensus disorder prediction 646 679 - -
Stsc121684g00003 679 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 55 675 - -
Stsc121684g00003 679 ProSiteProfiles Gnk2-homologous domain profile. 42 146 IPR002902 -
Stsc121684g00003 679 CDD STKc_IRAK 365 630 - -
Stsc121684g00003 679 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 326 434 - -
Stsc121684g00003 679 FunFam Liguleless narrow1 435 638 - -
Stsc121684g00003 679 SUPERFAMILY Protein kinase-like (PK-like) 344 645 IPR011009 -
Stsc121684g00003 679 Gene3D - 155 259 IPR038408 -
Stsc121684g00003 679 Gene3D - 42 146 IPR038408 -
Stsc121684g00003 679 Gene3D Phosphorylase Kinase; domain 1 327 434 - -
Stsc121684g00003 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Stsc121684g00003 679 ProSiteProfiles Protein kinase domain profile. 359 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121684g00003 679 ProSiteProfiles Gnk2-homologous domain profile. 152 259 IPR002902 -
Stsc121684g00003 679 Pfam Salt stress response/antifungal 48 143 IPR002902 -
Stsc121684g00003 679 Pfam Salt stress response/antifungal 166 255 IPR002902 -
Stsc121684g00003 679 FunFam Cysteine-rich receptor-like protein kinase 28 44 145 - -
Stsc121684g00003 679 SMART serkin_6 359 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121684g00003 679 Pfam Domain of unknown function (DUF3403) 632 679 IPR021820 GO:0004674
Stsc121684g00003 679 Pfam Protein tyrosine and serine/threonine kinase 363 626 IPR001245 GO:0004672|GO:0006468
Stsc121684g00003 679 Gene3D Transferase(Phosphotransferase) domain 1 435 640 - -
Stsc121684g00003 679 MobiDBLite consensus disorder prediction 662 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121684g00003 Stsc-Chr121684 5682 12877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121684g00003 10 679 Receptor kinase-like Gene Family AT4G05200 41.931 1.66e-179 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121684g00003 PK_Tyr_Ser-Thr 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121684g00003 - - ahf:112718031 1059.67