Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121647g00001 ATGAGTTCTGTTTCAACAACACAAGATAGGCCTTCTTTGATGACAAGAACGGCCATGAGAATATCGAGATCGAGATGGTTCACATTCTTGAGGAGAGTATTCCACTACCAAAACGGGCCGAGTTTTAACGAAGCAGAACTCGGCTCGAACCCTTTCAATTCCAGCACGTGGATGGTGCTGGAATTGGTGGCATTGGTGGTTCAAATAACAGGCACAACTTTCACTCTTGCCATTTCCAAGAGTGAGAGACCAATTTGGCCTATGAGGATTTGGGTAGCTGGGTATGACTTTGCTTGTGTTCTTAACCTGTTTCTTCTTTGTGCTCGTTACCATCAAATTCATGTCACCGCCACTCATAGAGATGTTCTTAGCGATTTGGAGCAGCAGAGATTCATTAATGGAGATGCAAGTTTAGAGAGGAGGTCACATTTGATGAGCAAATGCCGGAGTTCATTGGAGCTTTTCTTTGCAATGTGGTTTGTGATGGGAAATGTTTGGGCCTTTGACTCACGTTTTGGGTCATTCCAACAAGCCCCAAAACTCAATGTTATTTGCATAATCTTGCTCTCTTGGAATGCAATTTGCTACTCTTTCCCATTCATATTGTTCTTGTTGCTCTGCTGCATTGTCCCTTTGGTTAGTACCCTTCTTGGTTACAACATGAACATGGGTTCTAATGCTAAGGGTGCTTCTGAGGATCAAATCTCTCAGATTCCAAGTTGGAGGTATAAACAAGTTCATCATGATCATGGCTTGGATCATTTTGATCATGATTCTTGTCAAAGCACTGAAACATTCATCAATGAAGATCAAGAGTGTTGCATTTGCTTGAACAAATACAAAGACAAAGAAGAAGTTAGGCAATTGCCATGTTGCCATGTCTTCCATCTAAAATGTGTGGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGTAAACAGGGATTACAGAGGTAG 960 0.4167 MSSVSTTQDRPSLMTRTAMRISRSRWFTFLRRVFHYQNGPSFNEAELGSNPFNSSTWMVLELVALVVQITGTTFTLAISKSERPIWPMRIWVAGYDFACVLNLFLLCARYHQIHVTATHRDVLSDLEQQRFINGDASLERRSHLMSKCRSSLELFFAMWFVMGNVWAFDSRFGSFQQAPKLNVICIILLSWNAICYSFPFILFLLLCCIVPLVSTLLGYNMNMGSNAKGASEDQISQIPSWRYKQVHHDHGLDHFDHDSCQSTETFINEDQECCICLNKYKDKEEVRQLPCCHVFHLKCVDQWLRIISCCPLCKQGLQR 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121647g00001 319 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 11 317 - -
Stsc121647g00001 319 SUPERFAMILY RING/U-box 264 317 - -
Stsc121647g00001 319 SMART ring_2 273 313 IPR001841 -
Stsc121647g00001 319 Pfam Ring finger domain 272 314 IPR001841 -
Stsc121647g00001 319 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Stsc121647g00001 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 318 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121647g00001 Stsc-Chr121647 5528 9034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121647g00001 16 317 C3H Transcription Factor Family AT4G26580 62.914 3.67e-129 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121647g00001 - - ahf:112791228 570.466