Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121646g00004 ATGCACATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCGAATAACAGCCCGTTTACCGTATTTTATAATCCGAGGGCGAGCCCCTCAGAATTTGTGATTCCATTGGCCAAGTACAACAAAGCCATGTACACCCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAGACTGAGGAGTCTGGAGTACGAAGATATATGGGTACAATCACTGGTGTCAGTGACTTGGATCCGGTCCGATGGAAAAACTCTCAGTGGCGCAATCTTCAGGTTGGTTGGGATGAATCAACTGCTGGGGAGCGCCCAAGCAGAGTTTCGATCTGGGATATTGAACCGGTAGTTACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCGAAATTCCCAAAGCAACCGGGAATGCCAGAAGACGAGTCCGACATAGAAAATGCTTTTAAGAGAGCTATGCCCTGGCTTGGAGATGAACTTGGCATGAAGGATGCTTCAAGTTCAATCTTCCCTGGTTTGAGTTTGGTCCAATGGATGAGCATGCAGCAGCAGAACAACCAGTTTGCCGCAGCCCAACCTGGCTTTTTCCCTCCATCCATGCTATCGTCCAACACTCTCCATGGCAACCTTAACAATAATGATCATCAATCCAAGATATTGAACTTCCAAGCCCCAGTCCTCTCTGCAACAAATCTTCAATTTAACAAACCCAATTTACCCAACCAAGTCAACCAACTGCAGCAATCTCCGGTATCATGGCCTCAACAGCTGCAGCAGCAACAACAGCAGTCGCAACCGCAGCAACAGCAGCAGCAGAAGCTGCAGTCATTGTTGCAATCACCAGTAAACCAGCTTCAGCCACAGCAGCAGCAACAGAGGCAACAGCAGCTGCCGGAGCCACAAAACTTGTCGCAGTCACAGCAACAGCAGCCCCAACTGACTCAACAGAGAACACAGCAGCTGCAACAACCACAGCTGCAGTCATCGCCGCAGCAACACCAACCTCAACAGTCATGTCAACAGCCAATTATGAATAATGGGGTAGTTACTTCTAACCAGATTTCGAATCAGTGTGTTCAAGTTCAGCAACCGGTAGCCTATTCTCAGCTTCAGCAACAGCAATTAGTCTCCGGAAGCATGCAGACACAACAAGGTATCCAACCTGCAAATAAGAATGCAATGCTAATGACATCTTTGCCACAAGACACACAATTTCAGCAACAGATAGATCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAACAACAGACACAGTTGCTACAATCTCCATTGCAGTTCTTGCAACAAAGCACATCACAGAGGGCACTGCAACCACTTCAAGGGACTCAAATATCACAGCAAAACCCCTCAGAGCAACAGTTACAGTTACAGCTGCTGCAGAAGCTGCAGCAGCAACAGCAGCAGCAACTTGTTTCAACATCTAGCCCACTTTTGCAGTCACAGCTTCTACAGCAAAAGAATACTCTTCCACAAAGCCAGCAACTGCCGCAGCTTCATCAATCACAGCAGCATCAACCTCAACAGCTCGGAAACAATTCGTTCTCAATGGAGAAGCTTCTCAGCAGCAACAACTTCTCTTCTTCGCCTCTAATGCAGTCACAACAGCTTCCTGTGAACCAACCAACCCTGAATACACCGAAATCACTTATAACTAGTAGAGCTCCTTCTAGTCTTACTGATGTAGATGCACCTTCATGCTCAACTTCACCGTCTACTAATACATGCCAGATATCAACCCCAAATCTCATGAAAAGAACTCAACAAGTACCAAGCACGTTTGGGGGAATGTCGGTAGTTGAGCCGACTAATAATTTGATTCAAGAGCTTCATAGTAAGTCTGAGATGCAGGTAAAACAAGAGTTATCCGGCATAAAGGGACCTGACCAGCTTAAATATAAAGGCACAATCAGTGATCAGCTGGAAGCTTCTTCATCCGGAACATCTTACTGTATTGATCCGGGTAGCATCCACCAGAACTTCCAACTTCCAAACTTCTGCATGGATGGCGATGTTCAATCACATCCTAGACAAAATCTGCCATTTGCCTCCAATCTTGATGGACTAGCAGCAGATACCATGCTCTCTAGAGGTTATGATTCTCAAAAAGATCTTCAAAACTTGCTGGCTAATTATGGCAGTGCTCCAAGAGACATTGAAACAGAGCTGTCCACTGCTGCCATCAGCTCGCAGTCATTTGGGTTGCCGNNNNNNNNNNCTTTCAAGCCTGGTTGCTCAAGTGATATTCCCATGAATGATGCTGGGGTTTTGAATAATGGCTTATGGGCTAACCAGACTCAGAGAATGCGAACATACACTAAGGTTCAAAAATGTGGTTCTGTTGGAAGATGCATCGACGTCACACGGTACAAAGGGTATGATGAACTCCGTCATGATTTGGCTCGAATGTTCGGGATCGAAGGGCAGCTAGAAGATCCTCAAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAGAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTCGTAAGCTGTGTTCAGAGCATAAAAATATTGTCATCCGCCGAGGTGCAACAAATGAGCTTGGATGGGGATTTAGGCCAAGTTCCGATCCCCAATCAAGCATGTAGTGGCACGGAAGGTGGCAATGCATGGAGGGGACAGTACGATGATAACTCTGCCGCCTCATTTAATCGATAA 2706 0.4601 MHIGILAAAAHAASNNSPFTVFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQQNNQFAAAQPGFFPPSMLSSNTLHGNLNNNDHQSKILNFQAPVLSATNLQFNKPNLPNQVNQLQQSPVSWPQQLQQQQQQSQPQQQQQQKLQSLLQSPVNQLQPQQQQQRQQQLPEPQNLSQSQQQQPQLTQQRTQQLQQPQLQSSPQQHQPQQSCQQPIMNNGVVTSNQISNQCVQVQQPVAYSQLQQQQLVSGSMQTQQGIQPANKNAMLMTSLPQDTQFQQQIDQQASLLQRQQQQQTQLLQSPLQFLQQSTSQRALQPLQGTQISQQNPSEQQLQLQLLQKLQQQQQQQLVSTSSPLLQSQLLQQKNTLPQSQQLPQLHQSQQHQPQQLGNNSFSMEKLLSSNNFSSSPLMQSQQLPVNQPTLNTPKSLITSRAPSSLTDVDAPSCSTSPSTNTCQISTPNLMKRTQQVPSTFGGMSVVEPTNNLIQELHSKSEMQVKQELSGIKGPDQLKYKGTISDQLEASSSGTSYCIDPGSIHQNFQLPNFCMDGDVQSHPRQNLPFASNLDGLAADTMLSRGYDSQKDLQNLLANYGSAPRDIETELSTAAISSQSFGLPXXXXFKPGCSSDIPMNDAGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGQVPIPNQACSGTEGGNAWRGQYDDNSAASFNR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121646g00004 901 MobiDBLite consensus disorder prediction 879 901 - -
Stsc121646g00004 901 MobiDBLite consensus disorder prediction 231 342 - -
Stsc121646g00004 901 Pfam Auxin response factor 9 91 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc121646g00004 901 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 360 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc121646g00004 901 FunFam Auxin response factor 769 863 - -
Stsc121646g00004 901 Pfam AUX/IAA family 771 860 IPR033389 -
Stsc121646g00004 901 SUPERFAMILY CAD & PB1 domains 787 852 - -
Stsc121646g00004 901 FunFam Auxin response factor 46 118 - -
Stsc121646g00004 901 ProSiteProfiles PB1 domain profile. 774 867 IPR000270 GO:0005515
Stsc121646g00004 901 Gene3D - 769 863 - -
Stsc121646g00004 901 Gene3D - 46 117 - -
Stsc121646g00004 901 MobiDBLite consensus disorder prediction 187 213 - -
Stsc121646g00004 901 MobiDBLite consensus disorder prediction 487 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121646g00004 Stsc-Chr121646 15298 19440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121646g00004 341 901 B3 DNA Binding Superfamily AT1G19220 50.772 3.47e-136 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121646g00004 K14486 - gmx:100804628 714.146