Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121646g00003 ATGGCGACAGCTCAGCTAACAGCATCCTCAATTTCCTCGAGGAACGTGTCGTCGTTCGAAGGGCTTCGACCTTCCGCGGTTCAGTTCCCCTCTGTTGTCAGAATTGGAACCCTCACTCAAAGGAACTTCCGGGGTTTGGTTGTCAAAGCCGCCACTGTTGTTGCTCCAAAGTACACTGCTATTAGGCCGCTCGGGGACAGAGTACTGGTGAAAATTAAGGAAGCGGAAGAGAAGACTGATGGAGGAATTTTACTTCCTTCAACGGCTCAAACAAAGCCACAGGGTGGTGAGGTTGTTGCTGTTGGAGAGGGGAAATCATTTGGGAAGAACAAAATAGACATTAGTGTGCAGACGGGTGCGCAAGTTGTGTATTCGAAGTATGCTGGTACTGAGGTGGAGTTCAATGGTACAAAGCATCTTATACTGAAGGACGATGACATTGTCGGTATCCTTGAGACCGATGATATCAAGGATCTTAAACCCTTGAACGATAGAGTCTTAATTCAGGTTGCGCAGGCGGAGGACAAAACTGCAGGAGGTTTGTTGCTTACTGAGGCAACCAAGGAGAAACCTTCTATTGGAACAGTGATTGCGGTCGGCCCAGGGCCCCTTGACGAGGAAGGTAACAGAAAACCTTTGTCTGTTAATTCTGGCAACACAGTCTTGTACTCCAAATATGCTGGGAACGACTTCAAGGGCAAAGATGGTTATGACTACATTGCATTGAGGGCCTCAGATATCATGGCCATCCTTTCCTAG 759 0.4796 MATAQLTASSISSRNVSSFEGLRPSAVQFPSVVRIGTLTQRNFRGLVVKAATVVAPKYTAIRPLGDRVLVKIKEAEEKTDGGILLPSTAQTKPQGGEVVAVGEGKSFGKNKIDISVQTGAQVVYSKYAGTEVEFNGTKHLILKDDDIVGILETDDIKDLKPLNDRVLIQVAQAEDKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSVNSGNTVLYSKYAGNDFKGKDGYDYIALRASDIMAILS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121646g00003 252 SUPERFAMILY GroES-like 59 152 IPR011032 -
Stsc121646g00003 252 Gene3D GroES chaperonin 53 153 IPR037124 GO:0006457
Stsc121646g00003 252 Gene3D GroES chaperonin 154 252 IPR037124 GO:0006457
Stsc121646g00003 252 SMART Cpn10_2 60 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 SMART Cpn10_2 158 251 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 PANTHER 10 KDA HEAT SHOCK PROTEIN 157 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 PIRSF Cpn21 1 252 IPR017416 GO:0006457|GO:0046914|GO:1901671
Stsc121646g00003 252 CDD cpn10 61 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 Pfam Chaperonin 10 Kd subunit 61 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 Pfam Chaperonin 10 Kd subunit 159 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 FunFam 20 kDa chaperonin, chloroplastic 54 153 - -
Stsc121646g00003 252 SUPERFAMILY GroES-like 158 251 IPR011032 -
Stsc121646g00003 252 ProSitePatterns Chaperonins cpn10 signature. 159 183 IPR018369 GO:0005524|GO:0006457
Stsc121646g00003 252 Hamap Co-chaperonin GroES [groES]. 60 152 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 FunFam 10 kDa chaperonin 157 252 - -
Stsc121646g00003 252 ProSitePatterns Chaperonins cpn10 signature. 61 85 IPR018369 GO:0005524|GO:0006457
Stsc121646g00003 252 CDD cpn10 159 251 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 Hamap Co-chaperonin GroES [groES]. 158 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 PRINTS 10kDa chaperonin signature 83 104 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 PRINTS 10kDa chaperonin signature 61 76 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 PRINTS 10kDa chaperonin signature 138 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc121646g00003 252 PRINTS 10kDa chaperonin signature 117 129 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121646g00003 Stsc-Chr121646 12298 14659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121646g00003 1 252 Calmodulin-binding Proteins AT5G20720 77.953 3.94e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121646g00003 K04078 - gmx:100814751 416.387