Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121641g00003 ATGGCTGAAGGATGTGGTGGGAACTCAGTTGCAACCACTTCTCCTGCTTCATTCAATTGGTGGTACCTCCATGCAAATCATCATCACTCATGGAACAACAACAATAATAGTAATAATAATAGTAATCACCAAACAAACCCTAATTCTTCATCATGTTCTTGTGAGGAGGATATATCTGTTTCAACATCCTTCACTAGTGCCTCCAACCATTCAAGCCTCACTGTTGATTCTTCTAGAAGGCTTCTTGATAATCCACCTCCTCCTCCAAACCACTTCTTCCCGGAACATGCTGATGATAATCATCTTTGGAACCATGTTCTATCATCAAATGGGGAGTTACAAAACAATGAAGAAATTGGGGAGAAGTTTCTGGATGCACTATCATCTAAGAACATGACAAGCTCAATGTTTGAAGAACCAGCTTATTGTGACTACTTGAAGAAGCTTGATAGCACTAGTAATAGTTGGGAATATAGTGGTGGTGGTGGTGGAGGATCAAGTTCTTCATCATTCAACAACAACAACAATAGTTTTGATGAGAAGCACTTGAATAATAATAATAATAATAATAATGGTTTCAGTGATGCATTGATTGAGAATAATGAAAGGTTGACCAAGTTATCTAATCTTGTTAGCACTTGGTCTATTGCCCCACCTGACCCTCAACTTAGTACTACTACCCACTTATTTGAACATCCACCACCAACAAATAATAATAATAATAATCAATTTCCACAATCTCATGACCCTAATTGTAATTTCAAGCAACAACCTTTTATTGGGGATAATTCCACATCATCATATAACCCTATTAATATTAGTAGCTATGATCATCAAGGTATGATGAGCAAGGTGAAGGAAGAAGAATATCAACATCATCAAAATGGATTATTAATGAATGGTGTTTTTTCAGTGGGAGGAGATGGTGGTAATAAATTGTACCATGGTTTGCCAAACATTATTTCTTCATGCACAAGAAATAATAATAATAATATCTCAGATGTTATATCCTTTAATAGTAGGCTTGGGAGGCCAGTTCTTGGAATCCATGCACAAAAGGCTTCCATGAATTTATCTGAACAAAAGAAGCACCAACCTCTTCAAACATCATCCCCGATAAATAGAAGTAATAATAATGGAAGAGTAGAGGGGACAACAGCTCGTGAAGTAAAGAAGAAAAGATCTGAAGAATCTTCAGAAGCAATCTTGAAGAAGCCTAAGCAAGATACATCCACAGCTTCTTCTACAAAGGTGCAAGCACCCAAAGTCAAGCTGGGAGACAAGATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACAGACACAGCTTCGGTGCTGTTTGAAGCAATTGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGCTATTAAGCAACCCTTACTTGAAGTCTAATCCCCACAAGGATCCATGGGGAAGCTTGGAAAGAAAAGATCATCAAAAAGAGGATGGAAAATTAGACCTTAGGAGCAGAGGGCTTTGTTTAGTTCCAACTTCATATACTCCTCTTGTTTACAGAGAGAACAGTGGACCTGATTATTGGACACCAGCATACAGAGGATGTTTGTATAGGTGA 1599 0.379 MAEGCGGNSVATTSPASFNWWYLHANHHHSWNNNNNSNNNSNHQTNPNSSSCSCEEDISVSTSFTSASNHSSLTVDSSRRLLDNPPPPPNHFFPEHADDNHLWNHVLSSNGELQNNEEIGEKFLDALSSKNMTSSMFEEPAYCDYLKKLDSTSNSWEYSGGGGGGSSSSSFNNNNNSFDEKHLNNNNNNNNGFSDALIENNERLTKLSNLVSTWSIAPPDPQLSTTTHLFEHPPPTNNNNNNQFPQSHDPNCNFKQQPFIGDNSTSSYNPINISSYDHQGMMSKVKEEEYQHHQNGLLMNGVFSVGGDGGNKLYHGLPNIISSCTRNNNNNISDVISFNSRLGRPVLGIHAQKASMNLSEQKKHQPLQTSSPINRSNNNGRVEGTTAREVKKKRSEESSEAILKKPKQDTSTASSTKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKSNPHKDPWGSLERKDHQKEDGKLDLRSRGLCLVPTSYTPLVYRENSGPDYWTPAYRGCLYR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121641g00003 532 MobiDBLite consensus disorder prediction 65 96 - -
Stsc121641g00003 532 CDD bHLH_AtbHLH_like 424 466 IPR045239 -
Stsc121641g00003 532 MobiDBLite consensus disorder prediction 385 404 - -
Stsc121641g00003 532 MobiDBLite consensus disorder prediction 33 52 - -
Stsc121641g00003 532 MobiDBLite consensus disorder prediction 65 79 - -
Stsc121641g00003 532 MobiDBLite consensus disorder prediction 405 419 - -
Stsc121641g00003 532 MobiDBLite consensus disorder prediction 357 420 - -
Stsc121641g00003 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 424 474 IPR036638 GO:0046983
Stsc121641g00003 532 MobiDBLite consensus disorder prediction 357 384 - -
Stsc121641g00003 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 409 458 IPR011598 GO:0046983
Stsc121641g00003 532 MobiDBLite consensus disorder prediction 156 195 - -
Stsc121641g00003 532 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 140 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121641g00003 Stsc-Chr121641 18181 22173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121641g00003 21 532 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 31.111 1.00e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121641g00003 - - gmx:100527800 546.969