Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121635g00003 ATGGAAATGGAAGATCATCACCACTTTCATCTTCATCAGAACCACCACTACGCTTGTTTAACGGATCTGTTAATCAATAACGCTCCTATGCAACAACCACAACCACCAATAATAACCACTAGCCACCACCACTTGCCGCCGTTACCGGAGACAACAACGATGATGTTCGAGATGATGGCGGCGCCACGTGGTGGGATGGTTGAATCAGATTCAGGTGTAGTAGGGTGCATGGGTGGTGGAGGGGATGCATCATCATCATCAAAGGGAAGATGGCCAAGACAAGAGACTCTTACTCTTCTTGAAATCAGATCTAAGCTTCACCCTAAATTCAAAGATGCTAATCACAAAGGTCCCTTATGGGAACAAGTCTCTAGGATAATGTTAGAAGAATATGGATACGAAAGGAGTGGGAAGAAATGCAGGGAGAAGTTTGAGAATTTGTACAAATATTATAAGAAGACAAAGGAAGGAAAAGGAGCAAGACAAGATGGGAAGCATTATAGGTTCTTTCGCCAACTTGAAGCTTTGTATGGAGACAACAACACCAACAACAACCACCTTAATTTACAAACAAATAATAATAATAATAATAATAATAATAATAATATCAGCCTCATGAATTCGACTAGTGAATTTGACATATCATCATCATCAGAGTATAATGATGATGATGAATCGGCGACGATGAAGAGGAGGAGGAGGAAGATGAAGACGAAGGTGAAAGAGTTCATCGACTCGCAAATGAGCAAGCTTGTGAAGAAGCAAGAGGAATGGCTTGAGAAGTTAGTGAAGACAATGGAAGAGAAAGAGAAGGAGAGAGTTGTGAGAGAAGAAGAATGGAGAAGAGAAGAGGCAACTAGGTTGGAGAAGGAGCACATGTTTTGGGCCAAAGAAAGAGCTTGGATTGAAGCAAGGGATGCTGCATTGATTGATTCTTTGAACAAGTTAACAACAAGAAGAAGGGAAACCATCATCAAGCCTCAAGAACAAGAACAAGAAGAAGCTACTCCTCATGTTCATGGTGATGATGATGATGGTGTGATGATGATGATGATCATGGGAGACGAAGGAATCGTCAAAAACCAAAATGAGAATGAGGTCGAAGAAGATATCATCGGAGAAAAATACTTATATGTTTCAGAAGCACATTTAATACGTGTATCAGAAACATCTACGACCACTCATTTTTAA 1191 0.4039 MEMEDHHHFHLHQNHHYACLTDLLINNAPMQQPQPPIITTSHHHLPPLPETTTMMFEMMAAPRGGMVESDSGVVGCMGGGGDASSSSKGRWPRQETLTLLEIRSKLHPKFKDANHKGPLWEQVSRIMLEEYGYERSGKKCREKFENLYKYYKKTKEGKGARQDGKHYRFFRQLEALYGDNNTNNNHLNLQTNNNNNNNNNNNISLMNSTSEFDISSSSEYNDDDESATMKRRRRKMKTKVKEFIDSQMSKLVKKQEEWLEKLVKTMEEKEKERVVREEEWRREEATRLEKEHMFWAKERAWIEARDAALIDSLNKLTTRRRETIIKPQEQEQEEATPHVHGDDDDGVMMMMIMGDEGIVKNQNENEVEEDIIGEKYLYVSEAHLIRVSETSTTTHF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121635g00003 396 PANTHER FI21293P1 43 319 - -
Stsc121635g00003 396 CDD GT1 90 155 - -
Stsc121635g00003 396 MobiDBLite consensus disorder prediction 213 235 - -
Stsc121635g00003 396 Pfam Myb/SANT-like DNA-binding domain 90 176 IPR044822 -
Stsc121635g00003 396 FunFam trihelix transcription factor PTL-like 91 153 - -
Stsc121635g00003 396 ProSiteProfiles Myb-like domain profile. 83 148 IPR001005 -
Stsc121635g00003 396 MobiDBLite consensus disorder prediction 187 206 - -
Stsc121635g00003 396 Gene3D - 91 153 - -
Stsc121635g00003 396 Coils Coil 252 279 - -
Stsc121635g00003 396 MobiDBLite consensus disorder prediction 324 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121635g00003 Stsc-Chr121635 14945 17863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121635g00003 90 336 Trihelix Transcription Factor Family AT5G03680 53.309 1.78e-86 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc121635g00003 Myb_DNA-bind_4 1.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121635g00003 - - aip:107628057 432.18