Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121626g00001 ATGGTAGTGTTTATCACAATAAGCTTCCTCATCCTCATCTCTGTGCTATTGCTATGGCTTGCAAAGAAGGATAAGAGTGTCCATAAAGTGCCACCTGGGCCATGGAAATTACCCATCATAGGGAACCTCCATCAACTTGTAGGCTCATCACTTCCACACCATGCTCTCAGAAAACTAGCACAAAAACATGGTCCAATGATGCACCTTCAACTGGGTGAAATTTCAGCAGTGATTGTTTCTTCCCCCAACATGGCCAGAGAAATCATGAAGACTCATGATCTTGCTTTTGCAGAAAGGCCTGAGTTCCTTCCTTCCAAGATCATAGCCTATGGATCAACAAACATTGCATTCGCTCCCTATGGTGAATACTGGAGGCAGATGAGAAAGATATGCACACTTGAGCTTCTAAGTTCAAAGAAGGTTCAGTCTTTCTCCTATGTAAGACAAGACGAGGTAGCTAACATGGTAGAAACAATTTTCAAATCCGCTGGTGAAACCATCAATCTCAGTAAAATGATTAACAATCTCATAAGCACTGTGGTTTCTAGAGCTGCGTTTGGCAACTTATCTCAAGACCATGAACTGTTTGTGTCCCTTGTGAAGAAGTCAATAGCTTTATCTGACGGATTTGACCTTGCAGATTTGTTTCCTTCCTTCAAACCTCTGCATTTCATCACTGGTATGGAAGCCAAACTGAATGAGATGCATGTCAAGATCGACAAGATCTTAGACAAGATCATAAAGGAGGATGAAGAAAGGAATATACAGCCAGAGCAAGAAGAAAAGAACGAGAATCTTGTTGAGGTTCTTTTAAGAGTCCTACAGAGTGGCACCCTTGACACCCCAATTACAATGAACAATGTCAAAGCAGTCATTGTGGACGTGTTTTTTGCTGGAACAGATACTTCAAGTGTAGTTATAGAGTGGGTTATGTCGGAATTGACGAGAAGTCCCAGAGCCATGAAGAAGGCACAGGCCGAGATTCAACATGCTTTGAGAGGAAAGCAAACAATCCAGGAGGCAGATGTATCAGAGCTTCCCTACCTGAAGGCTGTGATCAAGGAAACAATGAGGTTACACCCTCCTCTTCCTCTGTTGCTTCCAAGACAAGCCAGACAAGACTGCACCATCAACGGATACCATATACCGATCAATACTAGAGTAATTGTAAATGCGTACGCGTTCGGAAGAGATCCAGATTACTGGTACGATGCAGAAACCTTCCTACCAGAAAGGTTTGAGGACAATCCAATGGATTTCAAAGGGACAAACTTTGAGTACATTCCTTTTGGAGCAGGAAGGAGAATGTGTCCTGGTCTACCACTTCAACTGGGAACTCCCTGA 1344 0.4308 MVVFITISFLILISVLLLWLAKKDKSVHKVPPGPWKLPIIGNLHQLVGSSLPHHALRKLAQKHGPMMHLQLGEISAVIVSSPNMAREIMKTHDLAFAERPEFLPSKIIAYGSTNIAFAPYGEYWRQMRKICTLELLSSKKVQSFSYVRQDEVANMVETIFKSAGETINLSKMINNLISTVVSRAAFGNLSQDHELFVSLVKKSIALSDGFDLADLFPSFKPLHFITGMEAKLNEMHVKIDKILDKIIKEDEERNIQPEQEEKNENLVEVLLRVLQSGTLDTPITMNNVKAVIVDVFFAGTDTSSVVIEWVMSELTRSPRAMKKAQAEIQHALRGKQTIQEADVSELPYLKAVIKETMRLHPPLPLLLPRQARQDCTINGYHIPINTRVIVNAYAFGRDPDYWYDAETFLPERFEDNPMDFKGTNFEYIPFGAGRRMCPGLPLQLGTP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121626g00001 447 CDD CYP71-like 62 440 - -
Stsc121626g00001 447 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 FunFam Cytochrome P450 99A2 20 446 - -
Stsc121626g00001 447 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 PRINTS E-class P450 group I signature 350 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 PRINTS E-class P450 group I signature 391 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 PRINTS E-class P450 group I signature 307 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Stsc121626g00001 447 Pfam Cytochrome P450 31 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 SUPERFAMILY Cytochrome P450 31 441 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 Gene3D Cytochrome P450 23 444 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121626g00001 447 PANTHER OS08G0105600 PROTEIN 54 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121626g00001 Stsc-Chr121626 3015 4470 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121626g00001 30 440 Cytochrome P450 AT3G48310 41.262 1.19e-117 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121626g00001 - K15472 gmx:100800554 555.058