Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121625g00001 ATGGAGAGAAGAACTTGTTGCTCAAATCATGAAGAATTGAATCGTGGTGCTTGGAGTGCCGAAGAAGACAAAATTCTCAGAGACTACATTAGGGTACATGGCAGCCAATATGGAACATGGAAAACCCTTCCCCAGAAAGCAGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTTAGATGGATGAATTATCTTAGACCAGATATCAAGAGAGGCAATATTTCTGAAGATGAAGAAGACCTCATCATTAGGCTTCACAACCTCCTTGGAAATAGATGGTCTCTTATAGCCGGAAGGCTCCCAGGAAGAACAGACAATGAAATAAAAAACTATTGGAATAGCACTTTGAGTAAAAAGGTAAACAAGAAAAGAAGCACCTTTTCTCCAGCGCCATCATCTCCTCCTAATAATAATAAGACGATTATTGTTGATGCTGATTACTCCCATGTAATCCGTACAAAGGCTACCAAGATCTCTAAGCCATTATTCATAAATGCAGAAGAATCAAGAACCTTTCTTGTAGATGTTGCTTCCCAAGCCAACAACTACAATGATTCAACAAATAATAACCAGATCATGCAACCTACCACCAGCAGTAGTGGGTCGTTTCTGCCATTTTTCAATGAAGATGTTGATGACAAAGCATTCTCACCATCTTTTCTTTTAGATTATGATCTTGAGAATGCTTGCTTAGATGATCTTCTCAACTTAGATTAG 714 0.3852 MERRTCCSNHEELNRGAWSAEEDKILRDYIRVHGSQYGTWKTLPQKAGLKRCGKSCRLRWMNYLRPDIKRGNISEDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNSTLSKKVNKKRSTFSPAPSSPPNNNKTIIVDADYSHVIRTKATKISKPLFINAEESRTFLVDVASQANNYNDSTNNNQIMQPTTSSSGSFLPFFNEDVDDKAFSPSFLLDYDLENACLDDLLNLD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121625g00001 237 CDD SANT 74 115 IPR001005 -
Stsc121625g00001 237 SMART sant 14 66 IPR001005 -
Stsc121625g00001 237 SMART sant 69 117 IPR001005 -
Stsc121625g00001 237 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 181 - -
Stsc121625g00001 237 FunFam Transcription factor RAX3 7 70 - -
Stsc121625g00001 237 Pfam Myb-like DNA-binding domain 15 64 IPR001005 -
Stsc121625g00001 237 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Stsc121625g00001 237 ProSiteProfiles Myb-like domain profile. 10 64 IPR001005 -
Stsc121625g00001 237 SUPERFAMILY Homeodomain-like 13 111 IPR009057 -
Stsc121625g00001 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Stsc121625g00001 237 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Stsc121625g00001 237 CDD SANT 17 64 IPR001005 -
Stsc121625g00001 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 64 IPR017930 -
Stsc121625g00001 237 FunFam Transcription factor TT2 73 142 - -
Stsc121625g00001 237 Gene3D - 7 70 - -
Stsc121625g00001 237 Gene3D - 73 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121625g00001 Stsc-Chr121625 8358 9968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121625g00001 1 119 MYB Transcription Factor Family AT4G09460 64.706 3.34e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121625g00001 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121625g00001 K09422 - gmx:100802704 239.195