Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121622g00002 ATGTCGTTTAGGAGTATAATCTTTGATATGAGGGGATTGAGATCCAGGTCTCAATCACACCATAGAGATGGTGGTGTTGTTTGTGTTAATGAGGGTGGTGGTTTGGTGGTTCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCACCTGAGCTTTTGAGAGATGTGCTTTTGAGGATTGAAGCCTCTGAAGATGCCTGGCCTGTCCGGAAACACGTTGTTGCCTGCGCCGGCGTGTGCCGCAGCTGGAGGGAGATCATGAACGAAATTGTCAAGTCTCCTCAAGTTTCCAGCAAGCTCACATTCCCAATCTCATTGAAGCAGCCTGGTTCAAGAGATTCTCTTCTCCAGTGTTATATTAAACGTAATCGTAGTAGTCAAACATATTATCTGTACCTTGGTTTAAATCAAGCCTCAACTGATGATGGAAAGTTCCTTCTTGCTGCACGTAAGTGTCGTCGTGCAACTCACACTGACTATATCATTTCTCTTAACTGTGATGACGTATCAAGAGGGAGTAGCACCTATATTGGAAAACTTAGATCAAACTTCCTGGGTACTAAGTTCACCATATACGATGCGCACCCTCCACTTTGTGGAGCTGCCAAAGTTACAAAGTCTCGTTCCACTAGGCTGGTTAGTCTCAAGCAAGTTTCTCCAAGAGTTCCTGCCGGCAACTATCCCATTGCGCATGTTTCGTATGATCTGAATGTTTTGGGATCCAGCAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATACCCGCATCGGCTGTTGAACCCGGAGGTGTAGCCCCAACACAGACTCATTTTCTACATAGCAGAATTGAAACTTCTCCATCTATCCCCTTCTTTAGATCAAAATCTACCCGTGTCGACAATCTCCAACCAGTTCCTTTGACTACTCAAAACGAGGGAATGCTTGTACTACGAAACAAGTCCCCTAGGTGGCATGAACAACTCCAGTGCTGGTGTTTGAATTTCAATGGACGAGTGACGGTAGCCTCTGTTAAAAACTTCCAGCTGGTTGCATCACCGAAAAATGGAGTTTCCGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAAGATGTATTCACCATGGATTACCAGTATCCGATCTCTGCCTTCGAAGCATTTGCGATTTGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1203 0.4514 MSFRSIIFDMRGLRSRSQSHHRDGGVVCVNEGGGLVVLDGLKQSCWANMPPELLRDVLLRIEASEDAWPVRKHVVACAGVCRSWREIMNEIVKSPQVSSKLTFPISLKQPGSRDSLLQCYIKRNRSSQTYYLYLGLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTIYDAHPPLCGAAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSSRGPRIMQCVMDAIPASAVEPGGVAPTQTHFLHSRIETSPSIPFFRSKSTRVDNLQPVPLTTQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121622g00002 400 CDD F-box_AtTLP-like 46 90 - -
Stsc121622g00002 400 Pfam F-box domain 46 91 IPR001810 GO:0005515
Stsc121622g00002 400 Gene3D Tubby Protein; Chain A 103 400 IPR025659 -
Stsc121622g00002 400 FunFam Tubby-like F-box protein 103 400 - -
Stsc121622g00002 400 ProSitePatterns Tub family signature 2. 385 400 IPR018066 -
Stsc121622g00002 400 Pfam Tub family 107 395 IPR000007 -
Stsc121622g00002 400 SUPERFAMILY F-box domain 40 89 IPR036047 GO:0005515
Stsc121622g00002 400 PRINTS Tubby superfamily signature 161 177 IPR000007 -
Stsc121622g00002 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Stsc121622g00002 400 PRINTS Tubby superfamily signature 177 201 IPR000007 -
Stsc121622g00002 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Stsc121622g00002 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
Stsc121622g00002 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Stsc121622g00002 400 PRINTS Tubby superfamily signature 227 254 IPR000007 -
Stsc121622g00002 400 PANTHER TUBBY-RELATED 40 398 - -
Stsc121622g00002 400 SUPERFAMILY Tubby C-terminal domain-like 95 400 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121622g00002 Stsc-Chr121622 13885 17614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121622g00002 1 400 TUB Transcription Factor Family AT2G47900 70.644 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc121622g00002 Tub 3.1e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121622g00002 K19600 - gmx:100809257 701.434