Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121622g00001 ATGATGGCTTTGAATTCGAGCTCAGTTGTTATGAAATTGGCGCTGTTTTCGTCGCCCGATACTGCCTCGGTTGATTCCATTACTCTGTTTGTGCTTCTCCTTTGTGCTTGTGTTCTCATTGGCCATCTTCTCGAGAAGAGTCGATGGATGACCGAGTCCGTCGTTGCCATAATCATTGGTCTTTTCACTGGAACCATAATTCTTATGACAACTAAGGGGAGAAGTTCACACATCTTGGTGTTCGATGAGGAGCTTTTCTTTATTTATCTTCTTCCACCCATTATATTCAATGCAGGGTTCCAGGTGAAAAAGAAACAATTCTTTCGGAACTTTCTGGCAATTGTTTTGTATGGTGTTGTTGGGAGTTTAATATCATTTGTCATTGTATCTCTGGGTTCCTTACAGTTGTTCAAATCATTGGATCTCGATTTAATGGGTTTGGGAGACTATTTTGCGCTCGGAGCTGTTTTCTCAGCGACCGATTCTGTTTGCACATTACAGGTGCTTAATCAAGAAGAGACACCACTCCTATATAGTCTAGTTTTCGGTGAAGGAGTGGTCAATGATGCAACTTCTGTGGTTCTGTTTAACGCAATCCAGAAATTCGACCTCTCACACATAACCTCAGCCAATATCATGCAGTTCATCGGCAATTTCTTCTATTTATTCCTGGCAAGCACTTTCCTGGGAGTAGTGGTTGGCTTGCTCAGTGCTTACGTGATAAAGAAGTTGTATATTGGCAGGCATTCAACTGACAGAGAAATTGCACTCATGATCCTGATGGCTTACATGTCTTATATGTTGGCTGAACTTCTCGATTTGAGTGGGATCCTTACCGTGTTCTTCTGTGGGATTGTCATGTCACACTATACCTGGCATAATGTGACTGAAAATTCTAGAATCACAAGCAGGCATGCTTTTGCAACCTTTTCTTTCGTATCCGAGATTTTTATATTCTTGTATGTTGGGATGGATGCTTTGGACATGGAGAAGTGGAAATACGCCAGCAATAGTCCATGGACATTACTTGGGGCCTGTGGAATACTCCTTTGCTTGGTTCTGCTCGGAAGGGCCGCGTTCGTGTTCCCCCTTTCATTCATAGCTAATTTGTTCAGGAAGTCCAAGGCTGATAAGATTGCATTCAAGCAGCAGGTTGTAATATGGTGGGCTGGGCTCATGCGAGGCGCTGTATCGATTGCACTCGCATATAATAAGTTTACTAGAAAAGGTCATACTCAACTGCAAGGGAATGCTATCATGATCACCAGCACCATCACAGTTGTCCTCTTGACTAATGTGGTAGGTGGATTACTAACCAAGCCTCTAATAAGGTCATTGCTTGGTCCACACAAGCATGGTGGGAGCTCAATGGCATCTGACTCATTTTCTTCTAAGACACTGCCACTTCTCGCAAATGGACAAGGATCGGAATCCAACATAGATACCGGCAACCCCATTGATTCAAGCCAAGTTGTCCACCATTATTGGAGAAGGTTCGATGACAGTTTCATGCGCCCAATGTTCGGAGGCAGGGGGTTTGTTCCTGTTGTTCCAGGTTCACCTGAAGAAGGGAGTAGTCTACATTAG 1587 0.4367 MMALNSSSVVMKLALFSSPDTASVDSITLFVLLLCACVLIGHLLEKSRWMTESVVAIIIGLFTGTIILMTTKGRSSHILVFDEELFFIYLLPPIIFNAGFQVKKKQFFRNFLAIVLYGVVGSLISFVIVSLGSLQLFKSLDLDLMGLGDYFALGAVFSATDSVCTLQVLNQEETPLLYSLVFGEGVVNDATSVVLFNAIQKFDLSHITSANIMQFIGNFFYLFLASTFLGVVVGLLSAYVIKKLYIGRHSTDREIALMILMAYMSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTENSRITSRHAFATFSFVSEIFIFLYVGMDALDMEKWKYASNSPWTLLGACGILLCLVLLGRAAFVFPLSFIANLFRKSKADKIAFKQQVVIWWAGLMRGAVSIALAYNKFTRKGHTQLQGNAIMITSTITVVLLTNVVGGLLTKPLIRSLLGPHKHGGSSMASDSFSSKTLPLLANGQGSESNIDTGNPIDSSQVVHHYWRRFDDSFMRPMFGGRGFVPVVPGSPEEGSSLH 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121622g00001 528 NCBIfam sodium/hydrogen exchanger 3 26 467 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc121622g00001 528 Gene3D - 24 447 IPR038770 -
Stsc121622g00001 528 PANTHER SODIUM/HYDROGEN EXCHANGER 18 508 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Stsc121622g00001 528 Pfam Sodium/hydrogen exchanger family 31 443 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Stsc121622g00001 528 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc121622g00001 528 PRINTS Na+/H+ exchanger signature 99 113 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc121622g00001 528 PRINTS Na+/H+ exchanger signature 85 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Stsc121622g00001 528 PRINTS Na+/H+ exchanger signature 114 122 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121622g00001 Stsc-Chr121622 5929 10442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121622g00001 7 526 Antiporters AT3G05030 65.736 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121622g00001 - - qsu:112020558 727.628