Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121620g00003 ATGGATGATAATAGAAGGGGTTGTTACAAGGAATTGTTGCCATTTGTGGTGCTTGTGGCGAATGAATGCAGCAACACAGGGTTGTTCACTCTCTTCAAAGCAGCCAGCAATGGAGGCATGAGCAACTATGTCTTTGTTGCTTATGCTTATTCTGTTGCATCCATTCTACTCCTTCCTCTCACTTTCTTTTATAGAAGATCAAGAGTGGTTCCTCCACTAAGTTTATCAATCATATCCAAGATTGCCCTGCTTGGGCTCATAGGATGTTCATCACAGATTCTGGGGTATGTTGGAATTAGTTACAGTAACCCCACACTTTCCTCTGCTATCAGTAACCTCATTCCTGCTTTCACCTTCATACTTGCCGTCCTTTGCAGGATGGAAAAGATAGATGTAAAATCTAGAACAACCCAAGCTAAGATTGTGGGAAGCATAATATCAATAGGAGGTGCATTTATAGTGACATTCTACAAAGGACCATCCATCATTATTGCTGATGATTCCCCTTCTCTCCATCTTGTTCAACGATTAAATAATAATGGAAACCTTCAATCAGTCGATAGAAATTGGGTCATTGGTGCCTTTCTTCTTACAGCTGGCAATGTCCTTCTCACAACATGGTTCATTGTTCAGGTGGAAATCTTGAAGGAGTTTCCAGATGAACTATCTATGGTCTGCTTTTACGACTTCTTTGCTGCCATAGTAGCATATGGTTTTGGCTTAATATTAGAGAGAAACTCAAGTGCTTGGAAACTAACACCAGATTTATCATTGATCTCCATAGTTTGCACTGGAATATTTAATAAGTTCTTGAGCACTGCAATATATGCATGGGGAATACATTTAAAGGGTCCTGTATATGTAGCAATGTTCAAGCCACTCTCAATTATTATTGCTGTTGCCATGGGTGTCATGTTCCTTGGGGATATCCTACACGTTGGAAGCATAATTGGAGCTACAGTAATCTCAATTGGATTTTACACTGTAATGTGGGGCAAAGCAACAGAGGAGAAGGAGGAAGATGTTGTTAATAGCCAGGATTCACCAACTACTACTGGTCATGAGCATGTTCCTCTCTTGCAAAGCTGTAAAAATGTAAATTCTCAAAAGAATGAAGATGTAAATGTATAG 1131 0.397 MDDNRRGCYKELLPFVVLVANECSNTGLFTLFKAASNGGMSNYVFVAYAYSVASILLLPLTFFYRRSRVVPPLSLSIISKIALLGLIGCSSQILGYVGISYSNPTLSSAISNLIPAFTFILAVLCRMEKIDVKSRTTQAKIVGSIISIGGAFIVTFYKGPSIIIADDSPSLHLVQRLNNNGNLQSVDRNWVIGAFLLTAGNVLLTTWFIVQVEILKEFPDELSMVCFYDFFAAIVAYGFGLILERNSSAWKLTPDLSLISIVCTGIFNKFLSTAIYAWGIHLKGPVYVAMFKPLSIIIAVAMGVMFLGDILHVGSIIGATVISIGFYTVMWGKATEEKEEDVVNSQDSPTTTGHEHVPLLQSCKNVNSQKNEDVNV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121620g00003 376 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020
Stsc121620g00003 376 Pfam EamA-like transporter family 30 155 IPR000620 GO:0016020
Stsc121620g00003 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 158 - -
Stsc121620g00003 376 PANTHER WAT1-RELATED PROTEIN 13 344 IPR030184 GO:0016020|GO:0022857
Stsc121620g00003 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121620g00003 Stsc-Chr121620 4579 8092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121620g00003 5 365 Nodulin-like Gene Family AT3G28050 49.198 4.32e-118 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121620g00003 - - adu:107490809 569.311