Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121620g00002 ATGGCAACAAGAATTAGAAGATGGTCCTTTAACAAGGACATGCTGCCAGTGATGGTGATAATAGGGATAGAGTGCAGTGACACTGGTTTGTTCACTCTCTTCAAAGCAGCCACAAACACAGGCATGAGTGACCGTGTCTTTGTTGCTTTTGCTTATGCTGTTGCTACCACTATCCTCCTTCCTTACCACTTTTTCTCCAAAAGATGCAGAGGGGCTCCTCCAATCAGTTTCTCCACACTAATGAAAATCGTTCTTCTTGGTGTCTTAGGAAGCTCATCTCAGGTATTGGGGTATGCTGGCATCAGTTACAGTTCTCCAGCACTTGCTTCGTCGATAAGCAACCTTCTCCCTGCTTTCACATTCTTGCTTGCCGTCGCATTCAGGAAGGAAAAGCTAGCAGCAAAGAGTAGAAGTAGCCAAGCTAAGGTAATAGGAAGCATTGTATCAATAGGAGGAGCATTTGTAGTGACATTCTACAAAGGTCCTTCTATCAACATTTTTCAAAGTCGCCTTTCTTTACCAACTGAACAACAAGTTATTAGCATTCCAAATTCAGTAGATACAACTTGGGTCATTGCTGGAGCTCTTCTCACAGCTGATTACTTACTGGTTTCACTAGGTTTCATTTGGCAGGTGGAAATCATGAAGGAGTACCCTGATGAGTTATCTGTGGTCTTCTTTTACAATGTCACTGCTACTATTGTGTCATTCACTGTAGCTTTATTCAGTGAGCCAAGAGCAAGTGCTTGGAAAATAGGACTTGACATATCATTGGTTTCTATTGTTTGCACTGGAATATTTGGAAAGTTCATGAGCACTGCAGTTTATACATGGGCATTGCACTTAAAGGGAGCTGTCTATGTAGCAACATTCAGGCCACTCTCAATTGTTATCGCCATTGTTATGGGAGTTATGTTCCTTGGTGATACTCTTCACATTGGAAGTATAATTGGAGCTGCAATAATATCAATCGGCTTTTATACTGTATTGTGGGGCAAAGCAACAGAAGAGACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTTTGGTAACCAGGAATCAGAAACTACTGAGAATGTTCCTCTTTTGCATAGCTATAAAACTGTACATGAAAATGTATATAATACAAGTACAAACTCTTCACAGTTAATATAA 1155 0.4043 MATRIRRWSFNKDMLPVMVIIGIECSDTGLFTLFKAATNTGMSDRVFVAFAYAVATTILLPYHFFSKRCRGAPPISFSTLMKIVLLGVLGSSSQVLGYAGISYSSPALASSISNLLPAFTFLLAVAFRKEKLAAKSRSSQAKVIGSIVSIGGAFVVTFYKGPSINIFQSRLSLPTEQQVISIPNSVDTTWVIAGALLTADYLLVSLGFIWQVEIMKEYPDELSVVFFYNVTATIVSFTVALFSEPRASAWKIGLDISLVSIVCTGIFGKFMSTAVYTWALHLKGAVYVATFRPLSIVIAIVMGVMFLGDTLHIGSIIGAAIISIGFYTVLWGKATEETEEEEEEEEEDFGNQESETTENVPLLHSYKTVHENVYNTSTNSSQLI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121620g00002 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 160 - -
Stsc121620g00002 384 PANTHER WAT1-RELATED PROTEIN 15 343 IPR030184 GO:0016020|GO:0022857
Stsc121620g00002 384 MobiDBLite consensus disorder prediction 336 353 - -
Stsc121620g00002 384 Pfam EamA-like transporter family 30 157 IPR000620 GO:0016020
Stsc121620g00002 384 Pfam EamA-like transporter family 203 330 IPR000620 GO:0016020
Stsc121620g00002 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 234 333 - -
Stsc121620g00002 384 Coils Coil 335 355 - -
Stsc121620g00002 384 MobiDBLite consensus disorder prediction 336 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121620g00002 Stsc-Chr121620 429 3579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121620g00002 7 368 Nodulin-like Gene Family AT3G28050 48.370 2.66e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121620g00002 - - gmx:100790743 427.557