Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121617g00006 ATGGGCTTGGGAAAATCTGTTGAATTGCTTGCTTGCATCTTTGCTCACCGGAGATCAGCATCTGAGAGTGATATACTAATTGATCCAGTGCCTCAAGTTAATGAAGACCAAATAGTCACTTTAAAAAGACTCAAAAGGGAGCGTGTGGAGTGTATATGTGGATCTGTGAGTGAAAGTATCAAATATGAAGGACTATGGGTTCAGTGCGACATTTGTGATGCTTGGCAGCATGCAGATTGTGTTGGTTATTCTGCTCGAGGAAAATCTCTGAAATCAAAACATGGATGTGATGGCAAGACTTATAAAACTACCATAGCTGTAAGGGATGGTGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGTGACTGGATCTCCCATTGCATCGGGTGCCACTCTTATTGTCTGCCCAGCTCCCATTTTGCCCCAGTGGCATGATGAAATTATACGCCATACGCGCTCGGGCTCCTTGAAAACTTGTATTTATGAAGGTGTGCGGGAGACTTCTTTATCCAACACATCCATGATGGATATTAGTGAACTCGCCACCGCTGACATTGTGTTAACTACCTATGATGTGCTTAAAGAGGATTTATCCCATGATTCTGATAGACATGAAGGTGATCGACACTTTTTGAGATTTCAAAAGAGGTTGGCTCCATAG 666 0.4234 MGLGKSVELLACIFAHRRSASESDILIDPVPQVNEDQIVTLKRLKRERVECICGSVSESIKYEGLWVQCDICDAWQHADCVGYSARGKSLKSKHGCDGKTYKTTIAVRDGEYVCQMCSELIQVTGSPIASGATLIVCPAPILPQWHDEIIRHTRSGSLKTCIYEGVRETSLSNTSMMDISELATADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRLAP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121617g00006 221 ProSiteProfiles Zinc finger PHD-type profile. 48 120 IPR019787 -
Stsc121617g00006 221 ProSitePatterns Zinc finger PHD-type signature. 51 117 IPR019786 -
Stsc121617g00006 221 Gene3D - 99 212 IPR038718 -
Stsc121617g00006 221 SMART PHD_3 50 118 IPR001965 -
Stsc121617g00006 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 201 IPR027417 -
Stsc121617g00006 221 SUPERFAMILY FYVE/PHD zinc finger 47 119 IPR011011 -
Stsc121617g00006 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 219 - -
Stsc121617g00006 221 Pfam SNF2-related domain 1 204 IPR000330 GO:0005524|GO:0140658
Stsc121617g00006 221 Pfam PHD-finger 51 119 IPR019787 -
Stsc121617g00006 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 98 IPR013083 -
Stsc121617g00006 221 CDD PHD_TCF19_like 52 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121617g00006 Stsc-Chr121617 17953 19029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121617g00006 126 208 RAD5 or RAD16-like Gene Family AT5G22750 36.905 4.85e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc121617g00006 SNF2_N 1.5e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121617g00006 K15710 - gmx:100776659 399.438