Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121617g00005 ATGCTCCCACAGGCTGCAGACCTTACCCTGAGAGTGCCCACTAAAGGAAAGCAGTTCTGTCGAACATCTAGAAAGCATTTTATTGACAGGGTTGACCATTGTCCTTTGAAGATGCAAAAAATAAGCGGCTCTAATGACATAAAATTTTCAGCAGCTTCGGTAGAACTATCAGACGCTACATCCAGCTGTTTAGAAGATGACTTAAATGAGGATCAGGATGTTAATGATGCCTCTGTCTGCACTGTCAAATCTCTGAGAACAGAATGTGAAGATTTGAAGCAGAAATACTTATCTGTGTTCAGTACAAGACTATATGCAGCTCAACAGGAGTTTCAAAACTCATACATGCAGGTTAGTAATGGATTTAGTGACGGCAAAGCAGAGCAAAATATGTTTTGGTGGCTAGAAGTACTTCATCATGCTGAACAGAACAAGGATTTCTCAACTGAGCTGACTAGAAAGATTGAAGAAGTGATCTCAGCAGCTGCAAATAGTTCAAAGTCATCCAAAATAGCTGCTCGTTTCCGGAGCATATCATCTCTGAAGTATCAAATTCAGACAGGCTTGGATCAGTTAGAGACCTCTCGGAAAGGTCTACTAGATCGACTACTAGAAATTGATCAAACAATGGAGAAACCAAATGATGAAGACATTGACCGAATGGGTAAATGTCAAAATTGCCAACCTAATTGTGATGGTCCCTCATGCATTCTGTGTGAACTAGATGAACTATTCCAGGATTATGAAGCAAGACTATTTGTTCTTAAGAATGAACGTGGTGGAATAATTTCATCAGCTGAGGAGGCAGTATATCTTCAGAAGAAGAATTTTGCATTGAATCATTTCCTCTCAAAGCTATCAAAATCTAATCACAGAGCAACAGTATCTGAAATTGATAATGAAGAATCAAAGAAAAGGAATGTTGGGCAGAGAGTTGTGGTTTCGAGATCAGCATCTGAATTGGAGCTTATTCTTGGTGTTATAAAGAACTATTGCAAGGGTCAATTGGGAAGGGACGTTGTCTCTGCAGCAACCAAGCATTTACATGTGTTTGAGGGAATGAGGAAGGAGTTTGGTCATGCGAGGTCTTTGGCTTTAGCTCAAGCTCAGTACTTGCGTGCCCATGATGAAATAAAGATGTCTGTTTCCCGTTTGCACTTAAGGGCAAATGAAGATGATAAATCTCTCGATGCTTTAGGTGAAGATGAGCTATTTGCAGCTAGCTCAAACTTTTCACATGATAAGTTTATGTCGTTGAACATGTTGTCGCAGATAAAAGGAAAGCTCCGCTACTTAAAGGGGTTGGTACAATCTAAGCAAAAGCTGCCATTGGGAAGAAGTCCTGATAGGTCTTCATTCACTCAAGAGATAACTGCATTGCCAAACTCTACAGAAGAGAGGGGTGCAGTCATATTTAAAGCTGACGAGGAAAGCTGTCCAATTTGCCAAGAAAAGCTTGGCAGTCAGAAAATGGTATTTCAATGTGGGCATCTTACGTGTTGCAAATGTTTATTTACTATGACTGAGAATAGGCTTCAACATAGCAAGGTTCACAATTGGGTTATGTGCCCAACATGTCGACAGCATACAGATTTTGGAAGCATTGCTTATGCTGTTGATGCACAGAATGAATCTCCTAATTCTTCAATTTCTACTACACTTGACAACTGTGAAAAAAGTGAAGCATCCATTATTGTCAAAGGCTCATATGGAACTAAGATTGAAGCGATCACTAGAAGAATCTTGTGGATAAAGGCTACAGATCAAAGCANNNNNNNNNNAAAAGTTCTTGTGTTTTCAAGTTGGAATGACGTACTTGATGTATTGGAACACGCCTTTGCTGCAAATGACGTTACATTCATCCGCATGAAAGGAGGCAGGAAAGCACAAGTTGCCATCAGTCAATTTAGACAAGAGAATGGCAAGAAAGGTGAGAGGTCAGTATCAAAATCTATTCAGGTGTTATTGCTTTTAGTCCAACATGGAGCCAATGGCCTCAATCTATTGGAAGCACAGCATGTGGTCCTTGTTGAGCCATTACTCAATCCAGCTGCTGAAGCACAAGCGATCAGTCGTGTGCATCGTATCGGCCAAAAGAACAAGACCCTCATTCATCATTTCATTGTCAAAGACACTGTAGAGGAGAGCATATACAAGCTAAACAGAGGCAGGAGCAATCGTTCATTCATTAGTGGGAACACAAAAAATCAAGATCAGCCTGTTTTAACTCTGAAGGACGTGGAATCCTTACTGTCAAGAGCCCCACGAACAATGCCTGAAAGTGATGAAAATGGCAACACAAATTCAAATCTAAGGCATTTACCACCATCATTGGCTGCAGCTATTGCTGCTGAGAGAAGAGTCGATGAGCAAAGGACATGA 2382 0.4051 MLPQAADLTLRVPTKGKQFCRTSRKHFIDRVDHCPLKMQKISGSNDIKFSAASVELSDATSSCLEDDLNEDQDVNDASVCTVKSLRTECEDLKQKYLSVFSTRLYAAQQEFQNSYMQVSNGFSDGKAEQNMFWWLEVLHHAEQNKDFSTELTRKIEEVISAAANSSKSSKIAARFRSISSLKYQIQTGLDQLETSRKGLLDRLLEIDQTMEKPNDEDIDRMGKCQNCQPNCDGPSCILCELDELFQDYEARLFVLKNERGGIISSAEEAVYLQKKNFALNHFLSKLSKSNHRATVSEIDNEESKKRNVGQRVVVSRSASELELILGVIKNYCKGQLGRDVVSAATKHLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMSVSRLHLRANEDDKSLDALGEDELFAASSNFSHDKFMSLNMLSQIKGKLRYLKGLVQSKQKLPLGRSPDRSSFTQEITALPNSTEERGAVIFKADEESCPICQEKLGSQKMVFQCGHLTCCKCLFTMTENRLQHSKVHNWVMCPTCRQHTDFGSIAYAVDAQNESPNSSISTTLDNCEKSEASIIVKGSYGTKIEAITRRILWIKATDQSXXXXKVLVFSSWNDVLDVLEHAFAANDVTFIRMKGGRKAQVAISQFRQENGKKGERSVSKSIQVLLLLVQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHHFIVKDTVEESIYKLNRGRSNRSFISGNTKNQDQPVLTLKDVESLLSRAPRTMPESDENGNTNSNLRHLPPSLAAAIAAERRVDEQRT 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121617g00005 793 MobiDBLite consensus disorder prediction 759 774 - -
Stsc121617g00005 793 Pfam Helicase conserved C-terminal domain 588 697 IPR001650 -
Stsc121617g00005 793 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 82 792 - -
Stsc121617g00005 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 756 IPR027417 -
Stsc121617g00005 793 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 543 IPR013083 -
Stsc121617g00005 793 Pfam Zinc finger, C3HC4 type (RING finger) 479 526 IPR018957 GO:0046872
Stsc121617g00005 793 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 576 748 IPR001650 -
Stsc121617g00005 793 SUPERFAMILY RING/U-box 474 531 - -
Stsc121617g00005 793 ProSiteProfiles Zinc finger RING-type profile. 479 527 IPR001841 -
Stsc121617g00005 793 CDD SF2_C_SNF 570 708 - -
Stsc121617g00005 793 SMART ring_2 479 526 IPR001841 -
Stsc121617g00005 793 MobiDBLite consensus disorder prediction 752 793 - -
Stsc121617g00005 793 Gene3D - 544 787 IPR027417 -
Stsc121617g00005 793 SMART helicmild6 607 697 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121617g00005 Stsc-Chr121617 7177 15479 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121617g00005 402 738 RAD5 or RAD16-like Gene Family AT5G22750 28.190 9.62e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121617g00005 K15710 - gmx:100776659 1201.04