Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121617g00004 ATGGAGAAACCAAATGATGAAGACATTGACCGAATGGGTAAATGTCAAAATTGCCAACCTAATTGTGATGGTCCCTCATGCATTCTGTGTGAACTAGATGAACTATTCCAGGATTATGAAGCAAGACTATTTGTTCTTAAGAATGAACGTGGTGGAATAATTTCATCAGCTGAGGAGGCAGTATATCTTCAGAAGAAGAATTTTGCATTGAATCATTTCCTCTCAAAGCTATCAAAATCTAATCACAGAGCAACAGTATCTGAAATTGATAATGAAGAATCAAAGAAAAGGAATGTTGGGCAGAGAGTTGTGGTTTCGAGATCAGCATCTGAATTGGAGCTTATTCTTGGTGTTATAAAGAACTATTGCAAGGGTCAATTGGGAAGGGACGTTGTCTCTGCAGCAACCAAGCATTTACATGTGTTTGAGGGAATGAGGAAGGAGTTTGGTCATGCGAGGTCTTTGGCTTTAGCTCAAGCTCAGTACTTGCGTGCCCATGATGAAATAAAGATGTCTGTTTCCCGTTTGCACTTAAGGGCAAATGAAGATGATAAATCTCTCGATGCTTTAGGTGAAGATGAGCTATTTGCAGCTAGCTCAAACTTTTCACATGATAAGTTTATGTCGTTGAACATGTTGTCGCAGATAAAAGGAAAGCTCCGCTACTTAAAGGGGTTGGTACAATCTAAGCAAAAGCTGCCATTGGGAAGAAGTCCTGATAGGTCTTCATTCACTCAAGAGATAACTGCATTGCCAAACTCTACAGAAGAGAGGGGTGCAGTCATATTTAAAGCTGACGAGGAAAGCTGTCCAATTTGCCAAGAAAAGCTTGGCAGTCAGAAAATGGTATTTCAATGTGGGCATCTTACGTGTTGCAAATGTTTATTTACTATGACTGAGAATAGGCTTCAACATAGCAAGGTTCACAATTGGGTTATGTGCCCAACATGTCGACAGCATACAGATTTTGGAAGCATTGCTTATGCTGTTGATGCACAGAATGAATCTCCTAATTCTTCAATTTCTACTACACTTGACAACTGTGAAAAAAGTGAAGCATCCATTATTGTCAAAGGCTCATATGGAACTAAGATTGAAGCGATCACTAGAAGAATCTTGTGGATAAAGGCTACAGATCAAAGCANNNNNNNNNNAAAAGTTCTTGTGTTTTCAAGTTGGAATGACGTACTTGATGTATTGGAACACGCCTTTGCTGCAAATGACGTTACATTCATCCGCATGAAAGGAGGCAGGTTTATTGTATCAGTTATGTGTGGGCTATTGGTGATCCATGTTTCATAA 1302 0.3917 MEKPNDEDIDRMGKCQNCQPNCDGPSCILCELDELFQDYEARLFVLKNERGGIISSAEEAVYLQKKNFALNHFLSKLSKSNHRATVSEIDNEESKKRNVGQRVVVSRSASELELILGVIKNYCKGQLGRDVVSAATKHLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMSVSRLHLRANEDDKSLDALGEDELFAASSNFSHDKFMSLNMLSQIKGKLRYLKGLVQSKQKLPLGRSPDRSSFTQEITALPNSTEERGAVIFKADEESCPICQEKLGSQKMVFQCGHLTCCKCLFTMTENRLQHSKVHNWVMCPTCRQHTDFGSIAYAVDAQNESPNSSISTTLDNCEKSEASIIVKGSYGTKIEAITRRILWIKATDQSXXXXKVLVFSSWNDVLDVLEHAFAANDVTFIRMKGGRFIVSVMCGLLVIHVS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121617g00004 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 338 IPR013083 -
Stsc121617g00004 433 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 418 - -
Stsc121617g00004 433 ProSiteProfiles Zinc finger RING-type profile. 270 318 IPR001841 -
Stsc121617g00004 433 Pfam Zinc finger, C3HC4 type (RING finger) 270 317 IPR018957 GO:0046872
Stsc121617g00004 433 SMART ring_2 270 317 IPR001841 -
Stsc121617g00004 433 SUPERFAMILY RING/U-box 265 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121617g00004 Stsc-Chr121617 7027 13757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121617g00004 193 416 RAD5 or RAD16-like Gene Family AT5G22750 22.768 8.16e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121617g00004 K15710 - gmx:100776659 696.041