Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121611g00004 ATGGCGCAAATTCCATCACCATCACTCATGAGAGTCCATGAAGTGTACAAGGTGAGGCCGTCATCACAAACCACCACAACCACCACCCTTCCCCTCACCTACTTCGACTTAATATGGCCAAGGCTTCCACCGGTTCAGTGTCTCTTCTTCTACGAATTCCCAAACCCAACCATTTCTTTCTTTGACTCTGTTGTTCCCAATCTCAAACGCTCCCTTGAGCTCACTCTCCAACACTTCTTCCCCCTCGCCGGTAACATCATCACTTGCCCACAACATTCTCCCGTTCCCACCATCACCTACGTCCCCCAACAAGATTCCGTTTCGCTCACTATATGCGAATCAAACGATGACTTTGACCAAATTTACTCCGATTTCTGTGAGATCTCTAAACGGCACCGTTTGTTACCTAGCTTGAGTGTTTCCGACGATGACAAAACGTCTTTGCTAGCATTACAGGTTACTTTCTTTCCAAATTCCGGCTTTTCCATCGGAATAACAGCTAACCATGCAGCTGTTGATGGAAAAAGCTCAGCGGTTTTTCTACATGCTTGGGCATACACATGTTCCAAGATCATGCAAAATCCATCCTTGCCACCAATATCGTTACCAGAAATTCTAACACCATTCAATGATAGGTCTGTTATAAAGGACCCAAAAGGACTCGCCCAATCATTCGTTGACACGTGGATGAACTTGTTTAGACCAAACAATAGGAGCATCTGGGAAACCAATAACAACAACAACGAAGAAGCACAAAGCAATAATGAATCAATTAAAGGCGTGTTTAAATTGAAGCCCTCTCATATTGAAAAGCTCAAGAATTATGCGAAATCCAAAACCGGTATTGCTAGGGTTTCAACTTTTTCTGTTATAACTGCTTATTCCCTATCATGCTTAGTGAAAACAGAACAACCAGAGATCAACGAGGAAGTTGTTCTTGTGTTCCCTGTGGATTTTAGATCAAGATTGGAAGCAGAGATTCCTCCAACTTATTTCGGTAACTGCATCTTGCCTCGTTTGGTTTTCGAAGAGAAAGAAAAGGTGATGTCGAACGAAGGATTCATTACCGTGCTGAAAGGGATAAGCGAGGTTTCGATCGGGTTGGAGAGTGGGGTTTCCAATGACGAAGAAAAATGGAAGAAGAAGCTTGAATCTGCTTTGGTGGAAGGGAAGAGAGTGTACTCCGTTGCTGGTTCAATCCGGTTCATGGTTTATGGGGTTGATTTTGGATACGGAAGACCTAAGAAAGTTGATGTTCCTTCTGTGGACAGAATTAGAGCTTTTGCACTTTCTGAGAGTAGAGATGGTGGCGGTGGTGTTGAGATTGCTTTGACTTTGAACAAGAAACAAATGGAGGCCTTTTCATCTCTTTTTTATCACCAAATTGAATCTTTTCTTATATGA 1404 0.4295 MAQIPSPSLMRVHEVYKVRPSSQTTTTTTLPLTYFDLIWPRLPPVQCLFFYEFPNPTISFFDSVVPNLKRSLELTLQHFFPLAGNIITCPQHSPVPTITYVPQQDSVSLTICESNDDFDQIYSDFCEISKRHRLLPSLSVSDDDKTSLLALQVTFFPNSGFSIGITANHAAVDGKSSAVFLHAWAYTCSKIMQNPSLPPISLPEILTPFNDRSVIKDPKGLAQSFVDTWMNLFRPNNRSIWETNNNNNEEAQSNNESIKGVFKLKPSHIEKLKNYAKSKTGIARVSTFSVITAYSLSCLVKTEQPEINEEVVLVFPVDFRSRLEAEIPPTYFGNCILPRLVFEEKEKVMSNEGFITVLKGISEVSIGLESGVSNDEEKWKKKLESALVEGKRVYSVAGSIRFMVYGVDFGYGRPKKVDVPSVDRIRAFALSESRDGGGGVEIALTLNKKQMEAFSSLFYHQIESFLI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121611g00004 467 PANTHER - 10 464 - -
Stsc121611g00004 467 Gene3D - 254 465 IPR023213 -
Stsc121611g00004 467 Gene3D - 10 240 IPR023213 -
Stsc121611g00004 467 Pfam Transferase family 16 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121611g00004 Stsc-Chr121611 21816 23472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121611g00004 10 459 Monolignol Biosynthesis Gene Families AT5G48930 23.427 2.18e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121611g00004 - - gmx:100800849 407.527