Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121611g00001 ATGGCTGCAATCTTCAAAGTCCATCAAGTTTGCGAAGTTGCACCGCCACAAGGAACCACCATCTCAACCACCCTTCCCTTAACCTACTTCGACTTGCTATGGCTAAGGCTTCCACCAGTTGAGCGTCTCTTCTTCTACCAACTCCCAAACCCAACCATCTCATCATTCTTTGATTCAGTTCTTCCGAATCTCAAACGCTCCCTTGAACTCACTCTCCAACACTTCTTCCCCCTCGCCGGCAACATCACTTGGCCACACCACTCTCCCATTCCCATCATCACCTACGCCCCCGGTCAAGATTCCGTTCCTCTCACTGTCTCCGAATCAAACGAAGATTTCAACCACATTAGCTCCGACTTCTGTGAGGTTTCTAAACGACGCCGTTTCGTACCTAGCTTGCGCATTTCCGATGACAAAGCTTCTTTGCTAGCATTACAGATTGCTTTCTTTCCAAACTCCGGCTTTGTAATCGGAATAACAGCACACCATGCAGCTGTCGATGGAAGCTGCTTAACGCTTTTTTACAAAGCTTGGGCCTACGCATGCTCCAAGACCATGCAAGATCCATCTCTGTCATCGTTACCTGAAAATCTAACACCGTTTATTGATAGATCCGTCATCAAGGACCCCAAAGGACTCGCCCAATCATTTGCCGACACGTGGCTGAACTTCAATGGACCGGACAATAGGAGCCTCATGCTCTGGAAAACCAATAACAAGGACGGCGAAGAACCACAAACCGATAATAATGTGTCGGTTAAAGGCGTGTTTAAATTAAAGGCCTCTGATATTGCAAAGCTCAAGAATTATGCGAAATCCAAAACCGGTATCGTTAAGATTTCAACTTTTCTTGTTACAGTTGCTTATTCCATATCATGCTTAGTGAAAACAGAACAACCAGAGAACGAGGAAGTTGTTCTCGTGTTCCCTGTGGATTGTAGATCAAGATTGGAGCCAGTGATTCCTCCGAGTTATTTCGGTAACTGCCTCTTGCCGCGTTTGGTTTACCAAGAGAAGGAGAAGGTGATGGCGAATGAAGGATTTGTAACCGTGCTGAAAGGGATAAGCGAGGTTTTGAAAGGGTTGGAGAGTGATGGTGTTTCGAATGATGAAGAGAAATGGAAGGCGAAGGTTGAATCTGCTATTGGGGAAGGGAAGAAAGTCTACTCCATTGCAGGTTCAATCAGGTTTGGAGTTTATGGGATTGATTTTGGATATGGAAGGCCTAAGAATGTTGATGTTGCTTCCGTGGATAAAACTGGTGCTTTTGCACTTTCTGAGAGTAGAGATGGTGATGGTGGTGTTGAGATTGCTCTGACTTTGAACAAGAAACAAATGGAGGCCTTTTCATCTCTTTTTTATCACCAAATTAAATCCTTTTAA 1383 0.449 MAAIFKVHQVCEVAPPQGTTISTTLPLTYFDLLWLRLPPVERLFFYQLPNPTISSFFDSVLPNLKRSLELTLQHFFPLAGNITWPHHSPIPIITYAPGQDSVPLTVSESNEDFNHISSDFCEVSKRRRFVPSLRISDDKASLLALQIAFFPNSGFVIGITAHHAAVDGSCLTLFYKAWAYACSKTMQDPSLSSLPENLTPFIDRSVIKDPKGLAQSFADTWLNFNGPDNRSLMLWKTNNKDGEEPQTDNNVSVKGVFKLKASDIAKLKNYAKSKTGIVKISTFLVTVAYSISCLVKTEQPENEEVVLVFPVDCRSRLEPVIPPSYFGNCLLPRLVYQEKEKVMANEGFVTVLKGISEVLKGLESDGVSNDEEKWKAKVESAIGEGKKVYSIAGSIRFGVYGIDFGYGRPKNVDVASVDKTGAFALSESRDGDGGVEIALTLNKKQMEAFSSLFYHQIKSF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121611g00001 460 SUPERFAMILY CoA-dependent acyltransferases 257 453 - -
Stsc121611g00001 460 SUPERFAMILY CoA-dependent acyltransferases 64 205 - -
Stsc121611g00001 460 Gene3D - 5 232 IPR023213 -
Stsc121611g00001 460 PANTHER - 5 460 - -
Stsc121611g00001 460 Gene3D - 250 460 IPR023213 -
Stsc121611g00001 460 Pfam Transferase family 16 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121611g00001 Stsc-Chr121611 8388 9779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121611g00001 43 454 Monolignol Biosynthesis Gene Families AT5G48930 24.292 6.77e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121611g00001 - K13264 gmx:100127426 474.552