Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121606g00004 ATGCTCTTCTATGGACCCCCCGGCACCGGAAAAACCACCACTGCTCTTGCAATAGCCCACCAGCTTTTCGGGCCTGAGCTTTACAAGTCTAGGGTGTTGGAGCTCAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGAACCAAGATAAAGGATTTTGCCGCCATTGCCGTTGGTATTAATCAGCGCAACGGTGGTTATCCTTGTCCACCATATAAGATTATTGTCTTGGATGAGGCAGACTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGAACGATGGAAACTTACTCTAAAGTTACACGGTTCTTTTTCATATGCAACTACATTAGCAGGATCATAGAACCACTGGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCATTGTCGGAAGAGATCATGAGCAACCGTATATTGTACATTTGCAATGAAGAAGGACTCAATCTTGATGCTAAGGCTCTTTCAACCCTGAGTTCTATTTCTCAAGGAGATCTTCGTCGGGCTATCACATACTTGCAGTCAGCAGCTCGATTATTTGGATCTTTCATTTCTTCAGAGGACCTGATTTCGGTATCTGGGATTGTTCCAGGAGAGGTCGTGGAGGCAATTCTCAAAGCATGCAAAAGTGGAAATTTTGATTCAGCCAACAAGGAAGTGAACAATTTCATTGCAGAGGGATATCCAGCTTCTCAGATTCTAACTCAGTTATTTGAGGCCATTCTTGAAGATGACATATCAGATGAACAGAAAGCAAGAATTGCCAAGAAGCTGGGAGAAGCAGATAAGTGTCTTGTTGATGGTGCTGATGAATACTTGCAGCTTCTTGACGTTGTCAGCACTACAATGCAAGCTTTTTGTAACATGCCAGAAGGATTTGCTTATGGGAGTTAG 894 0.4374 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAIAVGINQRNGGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSNRILYICNEEGLNLDAKALSTLSSISQGDLRRAITYLQSAARLFGSFISSEDLISVSGIVPGEVVEAILKACKSGNFDSANKEVNNFIAEGYPASQILTQLFEAILEDDISDEQKARIAKKLGEADKCLVDGADEYLQLLDVVSTTMQAFCNMPEGFAYGS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121606g00004 297 CDD AAA 1 122 - -
Stsc121606g00004 297 SUPERFAMILY post-AAA+ oligomerization domain-like 196 281 IPR008921 GO:0003677|GO:0006260
Stsc121606g00004 297 Pfam Replication factor C C-terminal domain 197 280 IPR013748 -
Stsc121606g00004 297 CDD HLD_clamp_RFC 130 189 - -
Stsc121606g00004 297 Gene3D - 131 193 - -
Stsc121606g00004 297 Pfam ATPase family associated with various cellular activities (AAA) 1 128 IPR003959 GO:0005524|GO:0016887
Stsc121606g00004 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 177 IPR027417 -
Stsc121606g00004 297 SMART AAA_5 1 130 IPR003593 GO:0016887
Stsc121606g00004 297 Gene3D - 196 284 - -
Stsc121606g00004 297 FunFam Replication factor C subunit 4 132 195 - -
Stsc121606g00004 297 Gene3D - 1 129 IPR027417 -
Stsc121606g00004 297 FunFam Replication factor C subunit 4 196 284 - -
Stsc121606g00004 297 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 1 276 - -
Stsc121606g00004 297 FunFam Replication factor C subunit 2 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121606g00004 Stsc-Chr121606 21234 24814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121606g00004 1 293 Core DNA Replication Machinery Family AT1G21690 77.966 4.64e-168 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121606g00004 K10755 - gmx:100798331 521.931