Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121601g00005 ATGCAGGTCTTGGCCAGCAAAACAAAAATCTATATGGTACTTGAGTATGTGACTGGAGGGGAGTTATTTGACAAAATTGCATCCAAGGGTAAACTTTGTGAAACTGAAGGCAGGAAGTTGTTCCAACAGTTGATTGATGGTGTGAGCTATTGCCACAATAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAAAATGTCCTAGTGGATGACAAAGGAAACATCAAGATAACTGATTTTGGTCTTAGTGCTTTACCCCAACATTTCAGGGGAGATGGATTGTTGCATACAACTTGTGGAAGTCCTAATTATGTCGCGCCAGAGATTCTTGCTAATAGGGGCTACAGTGGTGCAACATCAGATGCATGGTCATGCGGTGTGATCTTGTATGTAATTCTAACAGGATACTTACCCTTTGATGACAGAAATCTTGCAGTTCTTTACCAAAAGATTTTGAAAGGAGATGTTCAGATACCAAAATGGCTTTCAGCCGGTGCCCAAAACATGATAAAAAAAATTCTTGATCCCAACCCTGAAACCCGGATAACAATGGCTGCAATCAAAGAAGATCCATGGTTCAAACATGGGTATGCTCCGGCAAATCCTGAGGACGAGGAAGAGGACATATATATCGACAATGAAGCCTTCTCCATGAATGAAGTGCAAGTAGATGCTGAGCAAAGGAGTCCACAATCACCAACCCTTATCAATGCATTTCAGTTGATTGGGATGTCGTCATGCCTCGACCTCTCTGGATTTTTTGAGAAAGAGGATGTCTCTGAGAGGAAGATAAGATTCACATCCAACCTTTCGGCTAAAGATTTGGTAGAGAGGATTGAGGATATTGTGACGAAAATGGAATTTCAAGTCCAGAAGAAAAACGGCAGATTGAAAGTGATTCAAGAGAACAAAACACACAAAACTCTAGGCAGCCTCTCAGCTGCGGCAGAGGTTTTTGAAATAAGCCCATCATTGTATGTAGTAGAATTAAGAAAGTGTTACGGAGATGCATCTATATATAGACAGTTATGCAAGAAGTTATCAAATGATTTGGGTGTTCCTCCAAGGCAAGCATTGGTTAGCTCTGAAATGAATTAG 1095 0.411 MQVLASKTKIYMVLEYVTGGELFDKIASKGKLCETEGRKLFQQLIDGVSYCHNKGVFHRDLKLENVLVDDKGNIKITDFGLSALPQHFRGDGLLHTTCGSPNYVAPEILANRGYSGATSDAWSCGVILYVILTGYLPFDDRNLAVLYQKILKGDVQIPKWLSAGAQNMIKKILDPNPETRITMAAIKEDPWFKHGYAPANPEDEEEDIYIDNEAFSMNEVQVDAEQRSPQSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNLSAKDLVERIEDIVTKMEFQVQKKNGRLKVIQENKTHKTLGSLSAAAEVFEISPSLYVVELRKCYGDASIYRQLCKKLSNDLGVPPRQALVSSEMN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121601g00005 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Stsc121601g00005 364 Pfam NAF domain 232 291 IPR004041 GO:0007165
Stsc121601g00005 364 Gene3D Kinase associated domain 1, KA1 230 352 - -
Stsc121601g00005 364 Gene3D Transferase(Phosphotransferase) domain 1 21 193 - -
Stsc121601g00005 364 Gene3D Phosphorylase Kinase; domain 1 3 20 - -
Stsc121601g00005 364 CDD CIPK_C 236 347 - -
Stsc121601g00005 364 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 335 - -
Stsc121601g00005 364 SMART serkin_6 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121601g00005 364 ProSiteProfiles Protein kinase domain profile. 1 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121601g00005 364 FunFam Non-specific serine/threonine protein kinase 232 353 - -
Stsc121601g00005 364 SUPERFAMILY Protein kinase-like (PK-like) 5 236 IPR011009 -
Stsc121601g00005 364 ProSiteProfiles NAF domain profile. 230 254 IPR018451 GO:0007165
Stsc121601g00005 364 FunFam Non-specific serine/threonine protein kinase 17 199 - -
Stsc121601g00005 364 Pfam Protein kinase domain 2 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121601g00005 Stsc-Chr121601 20877 23376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121601g00005 1 360 CBL-interacting serine-threonine protein kinases AT3G17510 69.890 8.86e-179 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc121601g00005 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121601g00005 K07198 - qsa:O6P43_003749 605.134