LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121601g00004	ATGGTGATTTTGAGTCTTGGCAAGAGAGGGAATGAAAGGAAGGAAGGGAACAACAACAACAACAACAACGGAAGGCAACTTGGCAAGTACGAGTTGGGAAGGACGTTAGGCGAGGGCAATTTCGGAAAAGTCAAGTTCGCCAGGGATACTCTTTCTGGTCACCCTTTTGCCGTTAAGATCCTTGACAAGAACAAGATCACCTCCCTCAACGTCTCTGATCAGATAAAGAGGGAAATTGCCACACTCAAACTACTCAAGCATCCAAACGTGGTTAGATTACACGAGGTCTTGGCCAGCAAAACAAAAATCTATATGGTACTTGAGTATGTGACTGGAGGGGAGTTATTTGACAAAATTGCATCCAAGGGTAAACTTTGTGAAACTGAAGGCAGGAAGTTGTTCCAACAGTTGATTGATGGTGTGAGCTATTGCCACAATAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAAAATGTCCTAGTGGATGACAAAGGAAACATCAAGATAACTGATTTTGGTCTTAGTGCTTTACCCCAACATTTCAGGGGAGATGGATTGTTGCATACAACTTGTGGAAGTCCTAATTATGTCGCGCCAGAGATTCTTGCTAATAGGGGCTACAGTGGTGCAACATCAGATGCATGGTCATGCGGTGTGATCTTGTATGTAATTCTAACAGGATACTTACCCTTTGATGACAGAAATCTTGCAGTTCTTTACCAAAAGATTTTGAAAGGAGATGTTCAGATACCAAAATGGCTTTCAGCCGGTGCCCAAAACATGATAAAAAAAATTCTTGATCCCAACCCTGAAACCCGGATAACAATGGCTGCAATCAAAGAAGATCCATGGTTCAAACATGGGTATGCTCCGGCAAATCCTGAGGACGAGGAAGAGGACATATATATCGACAATGAAGCCTTCTCCATGAATGAAGTGCAAGTAGATGCTGAGCAAAGGAGTCCACAATCACCAACCCTTATCAATGCATTTCAGTTGATTGGGATGTCGTCATGCCTCGACCTCTCTGGATTTTTTGAGAAAGAGGATGTCTCTGAGAGGAAGATAAGATTCACATCCAACCTTTCGGCTAAAGATTTGGTAGAGAGGATTGAGGATATTGTGACGAAAATGGAATTTCAAGTCCAGAAGAAAAACGGCAGATTGAAAGTGATTCAAGAGAACAAAACACACAAAACTCTAGGCAGCCTCTCAGCTGCGGCAGAGGTTTTTGAAATAAGCCCATCATTGTATGTAGTAGAATTAAGAAAGTGTTACGGAGATGCATCTATATATAGACAGTTATGCAAGAAGTTATCAAATGATTTGGGTGTTCCTCCAAGGCAAGCATTGGTTAGCTCTGAAATGAATTAG	1374	0.4207	MVILSLGKRGNERKEGNNNNNNNGRQLGKYELGRTLGEGNFGKVKFARDTLSGHPFAVKILDKNKITSLNVSDQIKREIATLKLLKHPNVVRLHEVLASKTKIYMVLEYVTGGELFDKIASKGKLCETEGRKLFQQLIDGVSYCHNKGVFHRDLKLENVLVDDKGNIKITDFGLSALPQHFRGDGLLHTTCGSPNYVAPEILANRGYSGATSDAWSCGVILYVILTGYLPFDDRNLAVLYQKILKGDVQIPKWLSAGAQNMIKKILDPNPETRITMAAIKEDPWFKHGYAPANPEDEEEDIYIDNEAFSMNEVQVDAEQRSPQSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNLSAKDLVERIEDIVTKMEFQVQKKNGRLKVIQENKTHKTLGSLSAAAEVFEISPSLYVVELRKCYGDASIYRQLCKKLSNDLGVPPRQALVSSEMN	457

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc121601g00004	457	FunFam	Non-specific serine/threonine protein kinase	23	325	-	-
Stsc121601g00004	457	SMART	serkin_6	30	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc121601g00004	457	CDD	STKc_SnRK3	29	284	-	-
Stsc121601g00004	457	Gene3D	Transferase(Phosphotransferase) domain 1	110	312	-	-
Stsc121601g00004	457	SUPERFAMILY	Protein kinase-like (PK-like)	27	328	IPR011009	-
Stsc121601g00004	457	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	18	428	-	-
Stsc121601g00004	457	Pfam	Protein kinase domain	30	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc121601g00004	457	FunFam	Non-specific serine/threonine protein kinase	21	109	-	-
Stsc121601g00004	457	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	149	161	IPR008271	GO:0004672\|GO:0006468
Stsc121601g00004	457	FunFam	Non-specific serine/threonine protein kinase	325	446	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121601g00004	Stsc-Chr121601	20877	26237	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121601g00004	93	453	CBL-interacting serine-threonine protein kinases	AT3G17510	69.146	4.69e-176	496

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Stsc121601g00004		Pkinase	1.9e-70	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121601g00004	K07198		-	qsa:O6P43_003749	717.613

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